Variant report

Variant	rs9380390
Chromosome Location	chr6:33915448-33915449
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10456425	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4256431	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4458683	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7771788	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7771877	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772005	0.81[EUR][1000 genomes]
rs9357167	0.81[EUR][1000 genomes]
rs9357168	0.81[EUR][1000 genomes]
rs9366833	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9366834	0.81[EUR][1000 genomes]
rs9368787	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9368788	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9380391	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9380392	0.86[EUR][1000 genomes]
rs9380393	0.87[EUR][1000 genomes]
rs9394180	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9394181	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9461934	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv462899	chr6:33880480-33944014	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv602841	chr6:33880480-33944014	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33912600-33918800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:33913000-33917800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:33913000-33917800	Weak transcription	Fetal Intestine Large	intestine
4	chr6:33914200-33918200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:33915400-33917800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:33915400-33918400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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