Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:33913064..33919897-chr6:33920862..33926806,7	K562	blood:
2	chr6:33896064..33898965-chr6:33913599..33916267,2	MCF-7	breast:
3	chr6:33897453..33899504-chr6:33914430..33916808,2	K562	blood:
4	chr6:33906156..33908809-chr6:33914249..33915924,2	MCF-7	breast:
5	chr6:33893477..33895597-chr6:33913163..33915930,2	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10456425	0.82[ASN][1000 genomes]
rs10733180	0.85[EUR][1000 genomes]
rs10947469	0.93[EUR][1000 genomes]
rs4256431	0.84[ASN][1000 genomes]
rs4458683	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4571557	0.80[EUR][1000 genomes]
rs4583982	0.92[EUR][1000 genomes]
rs7771788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7772005	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9296104	0.93[EUR][1000 genomes]
rs9357167	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9357168	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9366833	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9366834	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9368787	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9368788	0.81[ASN][1000 genomes]
rs9380390	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9380391	0.80[ASN][1000 genomes]
rs9394180	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9394181	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9461934	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916210	chr6:33804111-34144062	Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
2	nsv462899	chr6:33880480-33944014	Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv602841	chr6:33880480-33944014	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7771877	C6orf1	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33912600-33918800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr6:33913000-33917800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:33913000-33917800	Weak transcription	Fetal Intestine Large	intestine
4	chr6:33914200-33918200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:33915400-33917800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:33915400-33918400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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