Variant report

Variant	rs4571622
Chromosome Location	chr7:67506972-67506973
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10227911	1.00[JPT][hapmap]
rs10234688	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10238808	1.00[ASN][1000 genomes]
rs10254721	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17145032	0.89[EUR][1000 genomes]
rs59683449	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6946767	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73387275	1.00[ASN][1000 genomes]
rs73387283	1.00[ASN][1000 genomes]
rs73387290	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018756	chr7:67472370-67508145	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
2	nsv1018102	chr7:67494709-67526914	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:67506600-67507000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr7:67506600-67508400	Weak transcription	A549	lung
3	chr7:67506800-67507000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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