Variant report

Variant	rs6946767
Chromosome Location	chr7:67534156-67534157
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10234688	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10238808	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10254721	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17145032	1.00[EUR][1000 genomes]
rs4571622	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59683449	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73387275	0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73387283	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73387290	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv607428	chr7:67526074-67788551	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:67533400-67543000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr7:67533800-67535000	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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