Variant report
| Variant | rs4572901 |
|---|---|
| Chromosome Location | chr4:80582492-80582493 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | FOS | chr4:80582450-80582520 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000248408 | TF binding region |
rSNPs within LD-proxies of this variant (count:16)
| rs_ID | r2[population] |
|---|---|
| rs11945761 | 0.84[EUR][1000 genomes] |
| rs11946990 | 0.84[EUR][1000 genomes] |
| rs13103587 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34114043 | 0.84[EUR][1000 genomes] |
| rs4368633 | 1.00[ASN][1000 genomes] |
| rs4370154 | 1.00[ASN][1000 genomes] |
| rs4431243 | 1.00[ASN][1000 genomes] |
| rs4535357 | 1.00[ASN][1000 genomes] |
| rs4577600 | 1.00[ASN][1000 genomes] |
| rs4613597 | 1.00[ASN][1000 genomes] |
| rs4975063 | 1.00[CEU][hapmap];1.00[ASN][1000 genomes] |
| rs4975101 | 1.00[ASN][1000 genomes] |
| rs4975102 | 1.00[ASN][1000 genomes] |
| rs58795949 | 0.95[EUR][1000 genomes] |
| rs7340867 | 1.00[ASN][1000 genomes] |
| rs7693123 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv879506 | chr4:80316417-80604625 | Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv1002031 | chr4:80459528-80759113 | Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv1005152 | chr4:80549659-80814456 | Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv997478 | chr4:80578536-80669871 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv1006225 | chr4:80578536-80670045 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:80582400-80582800 | Enhancers | NHEK | skin |
