Variant report

Variant	rs7340867
Chromosome Location	chr4:80575387-80575388
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12508777	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13103587	1.00[ASN][1000 genomes]
rs4339239	0.84[AFR][1000 genomes]
rs4368633	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4370154	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4401474	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4431243	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4535357	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4572901	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs4577600	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4613597	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4975063	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4975101	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4975102	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4975103	0.85[AFR][1000 genomes]
rs4975107	0.83[AMR][1000 genomes]
rs7693123	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879506	chr4:80316417-80604625	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1002031	chr4:80459528-80759113	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1005152	chr4:80549659-80814456	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:80571800-80575400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr4:80572000-80575400	Enhancers	Rectal Smooth Muscle	rectum
3	chr4:80572800-80575400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr4:80572800-80575600	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr4:80572800-80575600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr4:80573200-80575400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr4:80574800-80575400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr4:80574800-80575400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:80574800-80575600	Enhancers	NHEK	skin
10	chr4:80575000-80575600	Enhancers	H1 Cell Line	embryonic stem cell
11	chr4:80575000-80575600	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr4:80575200-80575400	Enhancers	H9 Cell Line	embryonic stem cell
13	chr4:80575200-80575400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr4:80575200-80575400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr4:80575200-80575400	Enhancers	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links