Variant report

Variant	rs7693123
Chromosome Location	chr4:80577522-80577523
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11945761	0.84[EUR][1000 genomes]
rs11946990	0.84[EUR][1000 genomes]
rs13103587	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34114043	0.84[EUR][1000 genomes]
rs4368633	1.00[ASN][1000 genomes]
rs4370154	1.00[ASN][1000 genomes]
rs4431243	1.00[ASN][1000 genomes]
rs4535357	1.00[ASN][1000 genomes]
rs4572901	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4577600	1.00[ASN][1000 genomes]
rs4613597	1.00[ASN][1000 genomes]
rs4975063	1.00[ASN][1000 genomes]
rs4975101	1.00[ASN][1000 genomes]
rs4975102	1.00[ASN][1000 genomes]
rs58795949	0.95[EUR][1000 genomes]
rs7340867	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879506	chr4:80316417-80604625	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1002031	chr4:80459528-80759113	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1005152	chr4:80549659-80814456	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:80575400-80578400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr4:80577400-80577600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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