Variant report

Variant	rs4575403
Chromosome Location	chr13:93430257-93430258
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10467334	1.00[CEU][hapmap]
rs10507995	0.87[GIH][hapmap];0.88[JPT][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.87[YRI][hapmap]
rs10507996	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1177741	0.86[JPT][hapmap]
rs1326103	1.00[CEU][hapmap]
rs13343226	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1570973	1.00[ASN][1000 genomes]
rs16947855	1.00[ASW][hapmap];1.00[CHB][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs16947861	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs16951951	1.00[CHB][hapmap];0.88[JPT][hapmap];0.86[ASN][1000 genomes]
rs2892647	1.00[CEU][hapmap];0.91[GIH][hapmap];0.81[TSI][hapmap]
rs7329664	1.00[CEU][hapmap]
rs9301835	1.00[CEU][hapmap]
rs9584071	1.00[CEU][hapmap]
rs9584072	1.00[CEU][hapmap]
rs9589631	1.00[CEU][hapmap]
rs9589634	1.00[CEU][hapmap];0.91[GIH][hapmap];0.81[TSI][hapmap]
rs9589635	1.00[CEU][hapmap];0.91[GIH][hapmap];0.81[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869070	chr13:93347616-94286933	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv456072	chr13:93419362-93506864	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv562746	chr13:93419362-93506864	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4575403	PIP4K2B	trans	brain	seeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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