Variant report

Variant	rs4579389
Chromosome Location	chr6:119363073-119363074
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10081010	0.86[EUR][1000 genomes]
rs1334925	0.82[EUR][1000 genomes]
rs1334926	0.84[EUR][1000 genomes]
rs1413908	0.86[EUR][1000 genomes]
rs1591367	0.85[EUR][1000 genomes]
rs2146762	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2209039	0.85[EUR][1000 genomes]
rs62421116	0.82[AFR][1000 genomes]
rs62421122	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9489576	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030400	chr6:119320153-119433830	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119314400-119364400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr6:119356400-119368800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:119356800-119366600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:119357400-119373400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:119358000-119363400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:119359400-119364400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:119360200-119364600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr6:119360800-119363200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:119360800-119363600	Enhancers	Placenta	Placenta
10	chr6:119361200-119364400	Weak transcription	K562	blood
11	chr6:119361400-119364400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr6:119361800-119364400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:119362000-119364400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:119362200-119363600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:119362600-119363800	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr6:119362600-119364400	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr6:119362600-119364600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr6:119363000-119363400	ZNF genes & repeats	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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