Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119253238..119258280-chr6:119398045..119402661,8	K562	blood:

Variant related genes	Relation type
ENSG00000111877	Chromatin interaction
ENSG00000253194	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10080387	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10081010	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11758672	1.00[ASN][1000 genomes]
rs11758675	1.00[ASN][1000 genomes]
rs1334925	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1334926	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1413908	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2146762	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2209039	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4579389	0.85[EUR][1000 genomes]
rs62421122	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62421156	0.84[EUR][1000 genomes]
rs6904368	1.00[ASN][1000 genomes]
rs6923475	1.00[ASN][1000 genomes]
rs6941681	1.00[ASN][1000 genomes]
rs72956707	1.00[ASN][1000 genomes]
rs72956712	1.00[ASN][1000 genomes]
rs72956714	1.00[ASN][1000 genomes]
rs7773450	1.00[ASN][1000 genomes]
rs909715	1.00[ASN][1000 genomes]
rs9489576	1.00[ASN][1000 genomes]
rs9489593	0.80[EUR][1000 genomes]
rs9489634	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030400	chr6:119320153-119433830	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119400600-119402800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:119402200-119403200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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