Variant report

Variant	rs11758675
Chromosome Location	chr6:119303482-119303483
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr6:119303447-119303893	ECC-1	luminal epithelium:	n/a	n/a

Variant related genes	Relation type
FAM184A	TF binding region

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10080387	1.00[ASN][1000 genomes]
rs10081010	1.00[ASN][1000 genomes]
rs11752609	1.00[ASN][1000 genomes]
rs11753713	0.85[AFR][1000 genomes]
rs11758672	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1413908	1.00[ASN][1000 genomes]
rs1591367	1.00[ASN][1000 genomes]
rs17826675	1.00[ASN][1000 genomes]
rs2000110	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2146762	1.00[ASN][1000 genomes]
rs2209039	1.00[ASN][1000 genomes]
rs62421122	1.00[ASN][1000 genomes]
rs62424030	1.00[ASN][1000 genomes]
rs62424031	1.00[ASN][1000 genomes]
rs62424037	0.85[AFR][1000 genomes]
rs72956707	1.00[ASN][1000 genomes]
rs9489532	0.80[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9489546	0.81[AFR][1000 genomes]
rs9489576	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119279800-119303600	Weak transcription	Adipose Nuclei	Adipose
2	chr6:119280000-119305200	Weak transcription	Primary T cells from cord blood	blood
3	chr6:119285200-119304400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr6:119285800-119340000	Weak transcription	Fetal Brain Male	brain
5	chr6:119287200-119305000	Weak transcription	HepG2	liver
6	chr6:119287200-119326600	Weak transcription	Fetal Brain Female	brain
7	chr6:119287400-119330000	Weak transcription	Fetal Muscle Leg	muscle
8	chr6:119288800-119315000	Weak transcription	Fetal Intestine Large	intestine
9	chr6:119289200-119304600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:119292400-119344000	Weak transcription	Brain Germinal Matrix	brain
11	chr6:119292800-119308600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:119293200-119345400	Weak transcription	Lung	lung
13	chr6:119293400-119306800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr6:119294200-119330800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr6:119295600-119307200	Weak transcription	Brain Hippocampus Middle	brain
16	chr6:119296800-119314600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr6:119297400-119304400	Weak transcription	Pancreas	Pancrea
18	chr6:119299600-119314600	Weak transcription	Fetal Intestine Small	intestine
19	chr6:119300600-119344000	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr6:119300800-119319600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr6:119300800-119342600	Weak transcription	Brain Anterior Caudate	brain
22	chr6:119301000-119321800	Weak transcription	Placenta	Placenta
23	chr6:119301400-119308000	Weak transcription	Fetal Muscle Trunk	muscle
24	chr6:119301400-119313200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr6:119301400-119319200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr6:119302200-119313400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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