Variant report
| Variant | rs2209039 |
|---|---|
| Chromosome Location | chr6:119404954-119404955 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| Variant related genes | Relation type |
|---|---|
| FAM184A | TF binding region |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs10080387 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10081010 | 0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11758672 | 1.00[ASN][1000 genomes] |
| rs11758675 | 1.00[ASN][1000 genomes] |
| rs1334925 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs1334926 | 0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs1413908 | 0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1591367 | 0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17080933 | 1.00[ASN][1000 genomes] |
| rs17080935 | 1.00[ASN][1000 genomes] |
| rs17514279 | 1.00[ASN][1000 genomes] |
| rs2146762 | 0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4579389 | 0.85[EUR][1000 genomes] |
| rs62421122 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62421156 | 0.84[EUR][1000 genomes] |
| rs6904368 | 1.00[ASN][1000 genomes] |
| rs6923475 | 1.00[ASN][1000 genomes] |
| rs6941681 | 1.00[ASN][1000 genomes] |
| rs72956707 | 1.00[ASN][1000 genomes] |
| rs72956712 | 1.00[ASN][1000 genomes] |
| rs72956714 | 1.00[ASN][1000 genomes] |
| rs7773450 | 1.00[ASN][1000 genomes] |
| rs909715 | 1.00[ASN][1000 genomes] |
| rs9489576 | 1.00[ASN][1000 genomes] |
| rs9489593 | 0.80[EUR][1000 genomes] |
| rs9489634 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1030400 | chr6:119320153-119433830 | Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionmiRNA | 30 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
