Variant report

Variant	rs9489593
Chromosome Location	chr6:119433391-119433392
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11753676	0.82[EUR][1000 genomes]
rs11753851	0.83[EUR][1000 genomes]
rs11754063	0.84[EUR][1000 genomes]
rs1334925	0.80[EUR][1000 genomes]
rs1591367	0.80[EUR][1000 genomes]
rs2209039	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030400	chr6:119320153-119433830	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	30 gene(s)	inside rSNPs	diseases
2	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119431800-119434200	Weak transcription	Placenta	Placenta
2	chr6:119431800-119438800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:119432000-119433400	Weak transcription	GM12878-XiMat	blood
4	chr6:119432000-119433800	Weak transcription	Fetal Lung	lung
5	chr6:119432000-119434000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:119432000-119434000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:119432000-119434000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:119432000-119434200	Weak transcription	Brain Cingulate Gyrus	brain
9	chr6:119432200-119433800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr6:119432400-119434000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:119432400-119434000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr6:119432400-119434000	Weak transcription	K562	blood
13	chr6:119432400-119434200	Weak transcription	HepG2	liver
14	chr6:119432400-119440800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:119432800-119434000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:119433200-119433800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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