Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10081010	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11758672	1.00[ASN][1000 genomes]
rs11758675	1.00[ASN][1000 genomes]
rs1334925	0.85[EUR][1000 genomes]
rs1334926	0.90[CEU][hapmap];0.91[GIH][hapmap];0.92[MEX][hapmap];0.92[TSI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1413908	0.90[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1591367	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2146762	0.81[CEU][hapmap];0.91[GIH][hapmap];0.93[MEX][hapmap];1.00[ASN][1000 genomes]
rs2209039	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62421122	1.00[ASN][1000 genomes]
rs62421156	0.94[EUR][1000 genomes]
rs6904368	1.00[ASN][1000 genomes]
rs6923475	1.00[ASN][1000 genomes]
rs6941681	1.00[ASN][1000 genomes]
rs72956707	1.00[ASN][1000 genomes]
rs72956712	1.00[ASN][1000 genomes]
rs72956714	1.00[ASN][1000 genomes]
rs7773450	1.00[ASN][1000 genomes]
rs909715	1.00[ASN][1000 genomes]
rs9489576	1.00[ASN][1000 genomes]
rs9489634	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030400	chr6:119320153-119433830	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region miRNA	30 gene(s)	inside rSNPs	diseases
2	nsv528632	chr6:119380885-119397860	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs10080387	FAM184A	cis	parietal	SCAN
rs10080387	FAM184A	cis	Nerve Tibial	GTEx
rs10080387	MCM9	cis	cerebellum	SCAN
rs10080387	MCM9	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119385000-119397200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:119387800-119391800	Weak transcription	Fetal Intestine Small	intestine
3	chr6:119388600-119392200	Weak transcription	Fetal Intestine Large	intestine
4	chr6:119389200-119393400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:119391200-119391400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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