Variant report

Variant	rs6923475
Chromosome Location	chr6:119529210-119529211
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:119524327..119526226-chr6:119528341..119530598,2	K562	blood:
2	chr6:119526535..119530412-chr6:119531327..119536580,5	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10080387	1.00[ASN][1000 genomes]
rs10081010	1.00[ASN][1000 genomes]
rs1413908	1.00[ASN][1000 genomes]
rs1591367	1.00[ASN][1000 genomes]
rs17080933	1.00[ASN][1000 genomes]
rs17080935	1.00[ASN][1000 genomes]
rs17081041	1.00[ASN][1000 genomes]
rs17514279	1.00[ASN][1000 genomes]
rs2146762	1.00[ASN][1000 genomes]
rs2209039	1.00[ASN][1000 genomes]
rs62421122	1.00[ASN][1000 genomes]
rs6904368	1.00[ASN][1000 genomes]
rs6941681	1.00[ASN][1000 genomes]
rs72956707	1.00[ASN][1000 genomes]
rs72956712	1.00[ASN][1000 genomes]
rs72956714	1.00[ASN][1000 genomes]
rs7741827	1.00[ASN][1000 genomes]
rs7773450	1.00[ASN][1000 genomes]
rs909715	1.00[ASN][1000 genomes]
rs9489634	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv886570	chr6:119450888-119600556	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1017507	chr6:119465981-119664949	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1034992	chr6:119512657-119540895	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119491800-119531200	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr6:119494600-119547400	Weak transcription	Esophagus	oesophagus
3	chr6:119498000-119536600	Weak transcription	Fetal Heart	heart
4	chr6:119498600-119531400	Strong transcription	HepG2	liver
5	chr6:119503400-119539800	Weak transcription	Gastric	stomach
6	chr6:119506800-119530800	Weak transcription	Stomach Mucosa	stomach
7	chr6:119509800-119530000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:119510000-119529800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr6:119511200-119530000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:119511400-119529800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:119511400-119530800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:119516200-119532800	Strong transcription	K562	blood
13	chr6:119519200-119558400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr6:119524200-119532000	Weak transcription	Fetal Brain Male	brain
15	chr6:119524600-119529800	Weak transcription	Fetal Kidney	kidney
16	chr6:119524800-119529600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr6:119524800-119537000	Weak transcription	Pancreas	Pancrea
18	chr6:119524800-119539000	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr6:119524800-119558400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr6:119525000-119535200	Weak transcription	Ovary	ovary
21	chr6:119525200-119534000	Weak transcription	Primary T cells from cord blood	blood
22	chr6:119525400-119529600	Weak transcription	Colon Smooth Muscle	Colon
23	chr6:119525400-119530200	Weak transcription	Dnd41	blood
24	chr6:119525400-119531200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:119525400-119531200	Weak transcription	NHLF	lung
26	chr6:119525400-119533400	Weak transcription	Rectal Smooth Muscle	rectum
27	chr6:119525400-119537000	Weak transcription	Right Ventricle	heart
28	chr6:119525400-119537400	Weak transcription	Brain Anterior Caudate	brain
29	chr6:119525400-119548600	Weak transcription	Aorta	Aorta
30	chr6:119525400-119556000	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr6:119525400-119558400	Weak transcription	Small Intestine	intestine
32	chr6:119525800-119533400	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr6:119525800-119537000	Weak transcription	Left Ventricle	heart
34	chr6:119525800-119554200	Weak transcription	Duodenum Mucosa	Duodenum
35	chr6:119525800-119555800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr6:119526000-119530800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr6:119526000-119531200	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr6:119526000-119532400	Weak transcription	Stomach Smooth Muscle	stomach
39	chr6:119526000-119538800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr6:119526000-119555200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr6:119526000-119558400	Weak transcription	Placenta	Placenta
42	chr6:119526200-119558400	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr6:119526400-119531200	Weak transcription	Primary hematopoietic stem cells	blood
44	chr6:119526600-119536400	Weak transcription	Fetal Intestine Large	intestine
45	chr6:119527200-119531000	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr6:119527400-119529600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr6:119527400-119529800	Weak transcription	Adipose Nuclei	Adipose
48	chr6:119527400-119530000	Weak transcription	Liver	Liver
49	chr6:119527600-119531600	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr6:119527600-119535200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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