Variant report

Variant	rs7773450
Chromosome Location	chr6:119536649-119536650
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10080387	1.00[ASN][1000 genomes]
rs10081010	1.00[ASN][1000 genomes]
rs1413908	1.00[ASN][1000 genomes]
rs1591367	1.00[ASN][1000 genomes]
rs17080933	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17080935	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17081041	1.00[ASN][1000 genomes]
rs17514279	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2146762	1.00[ASN][1000 genomes]
rs2209039	1.00[ASN][1000 genomes]
rs62421122	1.00[ASN][1000 genomes]
rs6904368	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6923475	1.00[ASN][1000 genomes]
rs6941681	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72956707	1.00[ASN][1000 genomes]
rs72956712	1.00[ASN][1000 genomes]
rs72956714	1.00[ASN][1000 genomes]
rs7741827	1.00[ASN][1000 genomes]
rs909715	1.00[ASN][1000 genomes]
rs9489634	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv886570	chr6:119450888-119600556	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1017507	chr6:119465981-119664949	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv1034992	chr6:119512657-119540895	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119494600-119547400	Weak transcription	Esophagus	oesophagus
2	chr6:119503400-119539800	Weak transcription	Gastric	stomach
3	chr6:119519200-119558400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr6:119524800-119537000	Weak transcription	Pancreas	Pancrea
5	chr6:119524800-119539000	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr6:119524800-119558400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:119525400-119537000	Weak transcription	Right Ventricle	heart
8	chr6:119525400-119537400	Weak transcription	Brain Anterior Caudate	brain
9	chr6:119525400-119548600	Weak transcription	Aorta	Aorta
10	chr6:119525400-119556000	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr6:119525400-119558400	Weak transcription	Small Intestine	intestine
12	chr6:119525800-119537000	Weak transcription	Left Ventricle	heart
13	chr6:119525800-119554200	Weak transcription	Duodenum Mucosa	Duodenum
14	chr6:119525800-119555800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr6:119526000-119538800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr6:119526000-119555200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr6:119526000-119558400	Weak transcription	Placenta	Placenta
18	chr6:119526200-119558400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr6:119528600-119551200	Weak transcription	Primary B cells from cord blood	blood
20	chr6:119530000-119537000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr6:119530000-119537200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:119531200-119552000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr6:119531400-119537200	Weak transcription	Right Atrium	heart
24	chr6:119531600-119558400	Weak transcription	NHLF	lung
25	chr6:119532200-119537200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr6:119535400-119538400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr6:119535600-119538200	Enhancers	Fetal Lung	lung
28	chr6:119535800-119537600	Enhancers	Adipose Nuclei	Adipose
29	chr6:119536000-119537000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr6:119536000-119537000	Weak transcription	Ovary	ovary
31	chr6:119536200-119537000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr6:119536200-119538400	Enhancers	Liver	Liver
33	chr6:119536400-119536800	Enhancers	Pancreatic Islets	Pancreatic Islet
34	chr6:119536400-119537200	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr6:119536400-119537400	Enhancers	Fetal Intestine Large	intestine
36	chr6:119536400-119537400	Enhancers	Fetal Intestine Small	intestine
37	chr6:119536400-119537400	Enhancers	Fetal Stomach	stomach
38	chr6:119536400-119538200	Enhancers	Colon Smooth Muscle	Colon
39	chr6:119536400-119540000	Genic enhancers	HepG2	liver
40	chr6:119536600-119537200	Genic enhancers	K562	blood
41	chr6:119536600-119537600	Strong transcription	Primary hematopoietic stem cells	blood
42	chr6:119536600-119538200	Enhancers	Fetal Heart	heart

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