Variant report

Variant	rs6904368
Chromosome Location	chr6:119562999-119563000
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:119549395..119552818-chr6:119562345..119566202,3	K562	blood:
2	chr6:119558122..119561935-chr6:119561959..119566839,6	K562	blood:
3	chr6:119558682..119563599-chr6:119563682..119567581,7	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10080387	1.00[ASN][1000 genomes]
rs10081010	1.00[ASN][1000 genomes]
rs1413908	1.00[ASN][1000 genomes]
rs1591367	1.00[ASN][1000 genomes]
rs17080933	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17080935	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17081041	1.00[ASN][1000 genomes]
rs17514279	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2146762	1.00[ASN][1000 genomes]
rs2209039	1.00[ASN][1000 genomes]
rs6923475	1.00[ASN][1000 genomes]
rs6941681	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72956707	1.00[ASN][1000 genomes]
rs72956712	1.00[ASN][1000 genomes]
rs72956714	1.00[ASN][1000 genomes]
rs7741827	1.00[ASN][1000 genomes]
rs7773450	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs909715	1.00[ASN][1000 genomes]
rs9489634	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv886570	chr6:119450888-119600556	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv1017507	chr6:119465981-119664949	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv522725	chr6:119549468-119565043	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
6	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119547400-119583000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:119558800-119565000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr6:119558800-119565000	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr6:119558800-119566200	Weak transcription	Primary B cells from cord blood	blood
5	chr6:119558800-119566200	Weak transcription	Left Ventricle	heart
6	chr6:119558800-119566200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:119558800-119567400	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr6:119558800-119567400	Weak transcription	Primary T cells from cord blood	blood
9	chr6:119558800-119567400	Weak transcription	Primary hematopoietic stem cells	blood
10	chr6:119558800-119568000	Weak transcription	Placenta	Placenta
11	chr6:119558800-119568200	Weak transcription	Primary B cells from peripheral blood	blood
12	chr6:119558800-119568600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr6:119558800-119569200	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr6:119558800-119569600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr6:119558800-119571800	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr6:119558800-119572000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:119558800-119572200	Weak transcription	Right Ventricle	heart
18	chr6:119558800-119572800	Weak transcription	Primary neutrophils fromperipheralblood	blood
19	chr6:119558800-119573600	Weak transcription	Lung	lung
20	chr6:119558800-119575200	Weak transcription	Esophagus	oesophagus
21	chr6:119558800-119576400	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr6:119558800-119576400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr6:119558800-119576400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr6:119558800-119576400	Weak transcription	Dnd41	blood
25	chr6:119558800-119576600	Weak transcription	Spleen	Spleen
26	chr6:119558800-119576800	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr6:119558800-119577600	Weak transcription	Aorta	Aorta
28	chr6:119558800-119578200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr6:119558800-119578200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr6:119558800-119578400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr6:119558800-119578600	Weak transcription	Fetal Thymus	thymus
32	chr6:119558800-119582200	Weak transcription	Colonic Mucosa	Colon
33	chr6:119558800-119589800	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr6:119558800-119590200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr6:119558800-119590400	Weak transcription	GM12878-XiMat	blood
36	chr6:119558800-119602000	Weak transcription	Gastric	stomach
37	chr6:119561000-119563400	Strong transcription	K562	blood
38	chr6:119561600-119563200	Enhancers	Adipose Nuclei	Adipose
39	chr6:119561600-119563400	Enhancers	Fetal Intestine Small	intestine
40	chr6:119561600-119563400	Enhancers	Right Atrium	heart
41	chr6:119561800-119563000	Enhancers	Duodenum Smooth Muscle	Duodenum
42	chr6:119561800-119563400	Enhancers	Fetal Lung	lung
43	chr6:119562000-119563400	Enhancers	Fetal Intestine Large	intestine
44	chr6:119562000-119563400	Enhancers	Fetal Kidney	kidney
45	chr6:119562000-119563400	Enhancers	Stomach Smooth Muscle	stomach
46	chr6:119562000-119563400	Enhancers	NHDF-Ad	bronchial
47	chr6:119562000-119564000	Enhancers	Liver	Liver
48	chr6:119562200-119563000	Enhancers	Rectal Smooth Muscle	rectum
49	chr6:119562200-119564200	Genic enhancers	HepG2	liver
50	chr6:119562200-119579400	Weak transcription	NHEK	skin

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