Variant report

Variant	rs4581284
Chromosome Location	chr1:114098499-114098500
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:114089317..114091954-chr1:114097454..114100252,3	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10489936	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1080307	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12723023	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12730675	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12731010	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12731969	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12739970	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12746609	0.81[AMR][1000 genomes]
rs12753075	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12753351	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12758546	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17274550	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17274620	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17274634	0.84[ASN][1000 genomes]
rs17359302	0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs17508163	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17508814	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1885454	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2359173	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2359174	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs34258372	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34799402	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35320278	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs35383900	0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs35836713	0.89[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs3747998	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3748003	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs3761931	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3789595	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs55855422	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56257513	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61817579	0.81[AMR][1000 genomes]
rs61819423	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61819424	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61820162	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs66782936	1.00[ASN][1000 genomes]
rs9803891	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv437013	chr1:114065955-114129092	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv947128	chr1:114088844-114122533	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114082600-114100400	Weak transcription	Fetal Kidney	kidney
2	chr1:114083200-114099800	Weak transcription	Pancreas	Pancrea
3	chr1:114083400-114100000	Weak transcription	Ovary	ovary
4	chr1:114083400-114110000	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr1:114085600-114101800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr1:114088200-114102000	Weak transcription	Colon Smooth Muscle	Colon
7	chr1:114088600-114099600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr1:114088600-114101000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr1:114088600-114109800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:114090400-114099800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr1:114091000-114099800	Weak transcription	Left Ventricle	heart
12	chr1:114091200-114101800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr1:114092000-114099600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr1:114092200-114099200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr1:114092400-114099600	Weak transcription	Fetal Muscle Trunk	muscle
16	chr1:114092400-114101600	Weak transcription	Adipose Nuclei	Adipose
17	chr1:114093400-114099800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr1:114094000-114099600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr1:114094000-114104600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr1:114094200-114099800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr1:114094200-114100200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr1:114094400-114099600	Weak transcription	Fetal Lung	lung
23	chr1:114094400-114099800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr1:114094400-114099800	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr1:114094800-114099800	Weak transcription	Primary hematopoietic stem cells	blood
26	chr1:114094800-114099800	Weak transcription	Lung	lung
27	chr1:114094800-114103000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr1:114094800-114138400	Weak transcription	NHDF-Ad	bronchial
29	chr1:114095000-114102200	Weak transcription	Placenta	Placenta
30	chr1:114095600-114099600	Weak transcription	Liver	Liver
31	chr1:114095600-114108200	Weak transcription	Primary T cells from cord blood	blood
32	chr1:114096000-114099800	Weak transcription	Aorta	Aorta
33	chr1:114096400-114108800	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr1:114096800-114099600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr1:114097200-114098800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr1:114097200-114099800	Weak transcription	Gastric	stomach
37	chr1:114097800-114099800	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr1:114098400-114101200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr1:114098400-114101600	Weak transcription	Stomach Mucosa	stomach

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