Variant report

Variant	rs34799402
Chromosome Location	chr1:114118574-114118575
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10489936	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1080307	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12723023	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12730675	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12731010	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12731969	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12734625	0.82[AMR][1000 genomes]
rs12739970	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12746609	0.85[AMR][1000 genomes]
rs12752932	0.81[AMR][1000 genomes]
rs12753075	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12753351	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12758546	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs13374352	0.82[AMR][1000 genomes]
rs17274550	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs17274620	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17274634	0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17359302	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17508163	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17508814	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1885454	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2359173	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2359174	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs34258372	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35320278	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35383900	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35836713	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3747998	0.88[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3748003	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs3761931	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3789595	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4581284	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55855422	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56257513	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61817579	0.85[AMR][1000 genomes]
rs61817586	0.82[AMR][1000 genomes]
rs61819423	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61819424	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61820162	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6674848	0.82[AMR][1000 genomes]
rs66782936	0.95[ASN][1000 genomes]
rs9803891	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv437013	chr1:114065955-114129092	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv947128	chr1:114088844-114122533	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114094800-114138400	Weak transcription	NHDF-Ad	bronchial
2	chr1:114100200-114127600	Weak transcription	Ovary	ovary
3	chr1:114100600-114118600	Weak transcription	Lung	lung
4	chr1:114100600-114118800	Weak transcription	Pancreas	Pancrea
5	chr1:114100600-114140200	Weak transcription	Left Ventricle	heart
6	chr1:114100600-114173400	Weak transcription	Gastric	stomach
7	chr1:114110800-114139600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:114112800-114118600	Weak transcription	Esophagus	oesophagus
9	chr1:114113000-114118600	Weak transcription	Stomach Mucosa	stomach
10	chr1:114113000-114138400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr1:114115400-114132000	Weak transcription	Primary T cells from cord blood	blood
12	chr1:114116400-114118600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr1:114116800-114128000	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr1:114116800-114138200	Weak transcription	Fetal Muscle Trunk	muscle
15	chr1:114117600-114138400	Weak transcription	Fetal Muscle Leg	muscle
16	chr1:114118200-114118800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr1:114118400-114118800	ZNF genes & repeats	Fetal Intestine Large	intestine
18	chr1:114118400-114119000	ZNF genes & repeats	Fetal Stomach	stomach
19	chr1:114118400-114119400	Enhancers	Liver	Liver

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