Variant report

Variant	rs66782936
Chromosome Location	chr1:114087710-114087711
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:114084981..114088872-chr1:114091176..114094977,3	MCF-7	breast:
2	chr1:114082118..114084710-chr1:114087135..114089127,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10489936	0.95[ASN][1000 genomes]
rs1080307	0.84[ASN][1000 genomes]
rs12723023	0.98[ASN][1000 genomes]
rs12730675	1.00[ASN][1000 genomes]
rs12731010	0.95[ASN][1000 genomes]
rs12731969	0.95[ASN][1000 genomes]
rs12739970	0.98[ASN][1000 genomes]
rs12753075	0.93[ASN][1000 genomes]
rs12753351	0.89[ASN][1000 genomes]
rs12758546	0.84[ASN][1000 genomes]
rs17274550	0.82[ASN][1000 genomes]
rs17274620	0.84[ASN][1000 genomes]
rs17274634	0.84[ASN][1000 genomes]
rs17359302	0.84[ASN][1000 genomes]
rs17508163	0.98[ASN][1000 genomes]
rs17508814	1.00[ASN][1000 genomes]
rs1885454	0.82[ASN][1000 genomes]
rs2359173	0.87[ASN][1000 genomes]
rs2359174	0.87[ASN][1000 genomes]
rs34258372	1.00[ASN][1000 genomes]
rs34799402	0.95[ASN][1000 genomes]
rs35320278	0.89[ASN][1000 genomes]
rs35383900	0.89[ASN][1000 genomes]
rs35836713	0.89[ASN][1000 genomes]
rs3747998	0.84[ASN][1000 genomes]
rs3748003	0.87[ASN][1000 genomes]
rs3761931	0.95[ASN][1000 genomes]
rs3789595	0.84[ASN][1000 genomes]
rs4581284	1.00[ASN][1000 genomes]
rs55855422	1.00[ASN][1000 genomes]
rs56257513	1.00[ASN][1000 genomes]
rs61819423	0.93[ASN][1000 genomes]
rs61819424	0.95[ASN][1000 genomes]
rs61820162	0.82[ASN][1000 genomes]
rs9803891	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv437013	chr1:114065955-114129092	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv946153	chr1:114080236-114088844	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114072200-114095800	Weak transcription	Aorta	Aorta
2	chr1:114078000-114090000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr1:114080600-114088600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:114082400-114088400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr1:114082600-114100400	Weak transcription	Fetal Kidney	kidney
6	chr1:114083200-114099800	Weak transcription	Pancreas	Pancrea
7	chr1:114083400-114095200	Weak transcription	Liver	Liver
8	chr1:114083400-114100000	Weak transcription	Ovary	ovary
9	chr1:114083400-114110000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr1:114084000-114092000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr1:114084200-114088600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr1:114084600-114089800	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr1:114084800-114095200	Weak transcription	Fetal Intestine Large	intestine
14	chr1:114084800-114095600	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr1:114085000-114092400	Weak transcription	Fetal Intestine Small	intestine
16	chr1:114085200-114088000	Weak transcription	Colon Smooth Muscle	Colon
17	chr1:114085600-114093600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr1:114085600-114094000	Weak transcription	HMEC	breast
19	chr1:114085600-114094200	Weak transcription	NHDF-Ad	bronchial
20	chr1:114085600-114101800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr1:114086800-114088800	Enhancers	NHEK	skin
22	chr1:114087000-114088800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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