Variant report

Variant	rs4587650
Chromosome Location	chr10:92632652-92632653
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr10:92630573-92633017	SK-N-SH	brain:	n/a	n/a
2	ZNF263	chr10:92630835-92632697	HEK293-T-REx	kidney:	n/a	chr10:92632243-92632252 chr10:92632334-92632343 chr10:92632241-92632262
3	STAT3	chr10:92632523-92632723	MCF10A-Er-Src	breast:	n/a	n/a
4	POLR2A	chr10:92631531-92632698	K562	blood:	n/a	n/a
5	POLR2A	chr10:92631098-92632787	PBDE	blood:	n/a	n/a
6	POLR2A	chr10:92631054-92632731	GM12891	blood:	n/a	n/a
7	POLR2A	chr10:92630982-92632801	GM12878	blood:	n/a	n/a
8	MTA3	chr10:92631364-92632780	GM12878	blood:	n/a	n/a
9	BATF	chr10:92632425-92632739	GM12878	blood:	n/a	chr10:92632638-92632647
10	SIN3A	chr10:92630971-92632676	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92629379..92632289-chr10:92632395..92635365,2	K562	blood:
2	chr10:92631710..92635669-chr10:92637980..92642007,3	K562	blood:

Variant related genes	Relation type
RPP30	TF binding region
ENSG00000222305	Chromatin interaction
ENSG00000148688	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56921871	1.00[AMR][1000 genomes]
rs59113045	1.00[AMR][1000 genomes]
rs73314025	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73315627	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73315640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92630400-92633000	Active TSS	NHDF-Ad	bronchial
2	chr10:92630600-92633200	Active TSS	iPS-20b Cell Line	embryonic stem cell
3	chr10:92630600-92633400	Active TSS	A549	lung
4	chr10:92630800-92632800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:92630800-92632800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr10:92630800-92632800	Active TSS	Brain Substantia Nigra	brain
7	chr10:92630800-92633000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
8	chr10:92630800-92633000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:92631000-92632800	Active TSS	H1 Cell Line	embryonic stem cell
10	chr10:92631000-92632800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
11	chr10:92631000-92632800	Active TSS	Fetal Intestine Large	intestine
12	chr10:92631000-92632800	Active TSS	Fetal Intestine Small	intestine
13	chr10:92631000-92632800	Active TSS	Fetal Muscle Trunk	muscle
14	chr10:92631000-92632800	Active TSS	Lung	lung
15	chr10:92631000-92633000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr10:92631000-92633000	Active TSS	HUES64 Cell Line	embryonic stem cell
17	chr10:92631000-92633000	Active TSS	iPS-15b Cell Line	embryonic stem cell
18	chr10:92631000-92633000	Flanking Active TSS	Primary hematopoietic stem cells	blood
19	chr10:92631200-92632800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr10:92631200-92632800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr10:92631200-92632800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr10:92631200-92632800	Active TSS	Esophagus	oesophagus
23	chr10:92631200-92633000	Active TSS	iPS-18 Cell Line	embryonic stem cell
24	chr10:92631200-92633400	Active TSS	HUES48 Cell Line	embryonic stem cell
25	chr10:92631200-92634000	Active TSS	GM12878-XiMat	blood
26	chr10:92631400-92632800	Bivalent/Poised TSS	HepG2	liver
27	chr10:92631600-92632800	Active TSS	Primary hematopoietic stem cells short term culture	blood
28	chr10:92632000-92632800	Flanking Active TSS	Primary B cells from cord blood	blood
29	chr10:92632000-92632800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
30	chr10:92632000-92632800	Flanking Active TSS	Adipose Nuclei	Adipose
31	chr10:92632000-92632800	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
32	chr10:92632000-92633000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr10:92632000-92633000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
34	chr10:92632000-92633000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
35	chr10:92632000-92633000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
36	chr10:92632200-92632800	Flanking Active TSS	Primary T cells from cord blood	blood
37	chr10:92632200-92632800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
38	chr10:92632200-92632800	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
39	chr10:92632200-92632800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
40	chr10:92632200-92632800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr10:92632200-92632800	Flanking Active TSS	Liver	Liver
42	chr10:92632200-92632800	Flanking Active TSS	Brain Angular Gyrus	brain
43	chr10:92632200-92632800	Flanking Active TSS	Brain Anterior Caudate	brain
44	chr10:92632200-92632800	Flanking Active TSS	Brain Cingulate Gyrus	brain
45	chr10:92632200-92632800	Flanking Active TSS	Brain Hippocampus Middle	brain
46	chr10:92632200-92632800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
47	chr10:92632200-92632800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
48	chr10:92632200-92632800	Flanking Active TSS	Fetal Brain Male	brain
49	chr10:92632200-92632800	Flanking Active TSS	Right Atrium	heart
50	chr10:92632200-92632800	Flanking Active TSS	HSMMtube	muscle

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