Variant report

Variant	rs73315627
Chromosome Location	chr10:92605783-92605784
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs4587650	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56921871	1.00[AMR][1000 genomes]
rs59113045	1.00[AMR][1000 genomes]
rs73314025	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73315640	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948363	chr10:92084520-92614402	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92597800-92616200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:92599400-92607200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:92600400-92606200	Weak transcription	NHEK	skin
4	chr10:92600400-92606400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr10:92602800-92606200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:92602800-92606400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr10:92603000-92606200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr10:92604000-92606200	Weak transcription	HMEC	breast
9	chr10:92605400-92606600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr10:92605600-92606800	Enhancers	Psoas Muscle	Psoas
11	chr10:92605600-92607800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr10:92605600-92610000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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