Variant report

Variant	rs56921871
Chromosome Location	chr10:92803639-92803640
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4587650	1.00[AMR][1000 genomes]
rs59113045	1.00[AMR][1000 genomes]
rs73315627	1.00[AMR][1000 genomes]
rs73315640	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430255	chr10:92769660-92872941	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv430258	chr10:92770145-92817973	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv430256	chr10:92770145-92872941	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv430260	chr10:92778715-92821721	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv430259	chr10:92778715-92848304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv895887	chr10:92791516-92836763	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92796800-92806800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:92796800-92810600	Weak transcription	Right Atrium	heart
3	chr10:92798000-92805600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr10:92798000-92810600	Weak transcription	Left Ventricle	heart
5	chr10:92801600-92804000	Enhancers	Liver	Liver
6	chr10:92802000-92804000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr10:92802600-92806400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr10:92803000-92803800	Enhancers	Fetal Heart	heart
9	chr10:92803000-92803800	Enhancers	Fetal Muscle Leg	muscle
10	chr10:92803000-92805000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr10:92803200-92804400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:92803200-92810200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr10:92803600-92803800	Enhancers	Dnd41	blood
14	chr10:92803600-92806800	Weak transcription	Ovary	ovary

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links