Variant report

Variant	rs4598570
Chromosome Location	chr10:4351632-4351633
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1033994	1.00[AMR][1000 genomes]
rs10736989	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10736990	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10795153	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10795154	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11252430	1.00[EUR][1000 genomes]
rs11252434	1.00[EUR][1000 genomes]
rs11252436	1.00[EUR][1000 genomes]
rs11252463	1.00[AMR][1000 genomes]
rs12242418	1.00[EUR][1000 genomes]
rs12243053	1.00[EUR][1000 genomes]
rs12249271	1.00[EUR][1000 genomes]
rs1926791	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1926792	1.00[EUR][1000 genomes]
rs2225080	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3918616	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3929825	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4366389	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4427470	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4459181	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4465281	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4465282	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4475833	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4880674	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4880675	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57376354	1.00[EUR][1000 genomes]
rs6601833	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6601834	1.00[AMR][1000 genomes]
rs7069950	1.00[AMR][1000 genomes]
rs7071967	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7075124	1.00[AMR][1000 genomes]
rs7084923	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7086908	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7097103	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7099281	1.00[AMR][1000 genomes]
rs7916930	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9423527	1.00[EUR][1000 genomes]
rs9663282	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894785	chr10:4306421-4372629	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4345400-4352400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr10:4348200-4357200	Weak transcription	Fetal Muscle Leg	muscle
3	chr10:4349400-4357800	Weak transcription	Ovary	ovary
4	chr10:4349400-4357800	Weak transcription	Psoas Muscle	Psoas
5	chr10:4349800-4353800	Enhancers	Fetal Heart	heart
6	chr10:4350400-4352400	Weak transcription	Brain Germinal Matrix	brain
7	chr10:4350400-4355600	Weak transcription	Fetal Brain Male	brain
8	chr10:4350400-4355800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:4350400-4357200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr10:4350600-4355200	Weak transcription	Fetal Lung	lung
11	chr10:4350800-4353400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr10:4350800-4358600	Weak transcription	Right Atrium	heart
13	chr10:4351600-4352400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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