Variant report

Variant	rs6601833
Chromosome Location	chr10:4347714-4347715
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4345271..4346802-chr10:4347547..4349820,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1033994	1.00[AMR][1000 genomes]
rs10736989	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10736990	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10795153	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10795154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11252430	1.00[EUR][1000 genomes]
rs11252434	1.00[EUR][1000 genomes]
rs11252436	1.00[EUR][1000 genomes]
rs11252463	1.00[AMR][1000 genomes]
rs12242418	1.00[EUR][1000 genomes]
rs12243053	1.00[EUR][1000 genomes]
rs12249271	1.00[EUR][1000 genomes]
rs1926791	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1926792	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2225080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3918616	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3929825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4366389	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4427470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4459181	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4465281	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4465282	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4475833	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4598570	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4880674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4880675	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57376354	1.00[EUR][1000 genomes]
rs6601834	1.00[AMR][1000 genomes]
rs7069950	1.00[AMR][1000 genomes]
rs7071967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7075124	1.00[AMR][1000 genomes]
rs7084923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7086908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7097103	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7099281	1.00[AMR][1000 genomes]
rs7916930	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9423527	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9663282	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894785	chr10:4306421-4372629	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv522540	chr10:4343047-4348396	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4334800-4349200	Weak transcription	Right Atrium	heart
2	chr10:4337800-4349200	Weak transcription	Fetal Heart	heart
3	chr10:4342800-4350600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:4344000-4348800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:4344400-4349200	Weak transcription	Fetal Brain Male	brain
6	chr10:4345400-4348200	Weak transcription	Fetal Lung	lung
7	chr10:4345400-4351400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr10:4345400-4352400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr10:4346800-4348200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:4347600-4349200	Weak transcription	Psoas Muscle	Psoas

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