Variant report

Variant	rs9423527
Chromosome Location	chr10:4336753-4336754
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10736989	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10736990	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10795153	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10795154	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11252430	1.00[EUR][1000 genomes]
rs11252434	1.00[EUR][1000 genomes]
rs11252436	1.00[EUR][1000 genomes]
rs12242418	1.00[EUR][1000 genomes]
rs12243053	1.00[EUR][1000 genomes]
rs12249271	1.00[EUR][1000 genomes]
rs1926791	0.84[AFR][1000 genomes]
rs1926792	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2225080	0.84[AFR][1000 genomes]
rs3918616	0.81[AFR][1000 genomes]
rs3929825	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4366389	1.00[EUR][1000 genomes]
rs4427470	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4459181	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4465281	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4465282	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4475833	1.00[EUR][1000 genomes]
rs4598570	1.00[EUR][1000 genomes]
rs4880674	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4880675	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57376354	1.00[EUR][1000 genomes]
rs6601833	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7071967	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7084923	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7086908	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7097103	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7916930	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9663282	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894785	chr10:4306421-4372629	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4331200-4338200	Weak transcription	Brain Germinal Matrix	brain
2	chr10:4334600-4336800	Weak transcription	Fetal Brain Male	brain
3	chr10:4334600-4337400	Weak transcription	Fetal Brain Female	brain
4	chr10:4334800-4339400	Weak transcription	Aorta	Aorta
5	chr10:4334800-4342600	Weak transcription	Fetal Lung	lung
6	chr10:4334800-4349200	Weak transcription	Right Atrium	heart
7	chr10:4335000-4337000	Weak transcription	Fetal Muscle Leg	muscle
8	chr10:4336200-4343000	Weak transcription	NHDF-Ad	bronchial
9	chr10:4336600-4338600	Weak transcription	H9 Cell Line	embryonic stem cell

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