Variant report

Variant	rs4605609
Chromosome Location	chr4:166112950-166112951
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166110516..166113387-chr4:166127174..166130105,2	K562	blood:
2	chr4:166112090..166114638-chr4:166115882..166117712,2	K562	blood:

Variant related genes	Relation type
ENSG00000109466	Chromatin interaction
ENSG00000170088	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10017705	0.83[GIH][hapmap];0.91[MEX][hapmap];0.80[EUR][1000 genomes]
rs10018252	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10023382	0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10032366	1.00[ASN][1000 genomes]
rs11724462	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11724504	0.83[ASN][1000 genomes]
rs11731244	0.83[GIH][hapmap];0.91[MEX][hapmap];0.80[EUR][1000 genomes]
rs11735290	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11735317	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11939254	0.83[ASN][1000 genomes]
rs12332076	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17585306	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];1.00[ASN][1000 genomes]
rs17585333	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.92[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28495910	0.92[ASN][1000 genomes]
rs28635044	1.00[ASN][1000 genomes]
rs28875870	0.80[EUR][1000 genomes]
rs4234892	0.83[GIH][hapmap];0.80[EUR][1000 genomes]
rs4588419	0.80[EUR][1000 genomes]
rs4690807	0.83[GIH][hapmap];0.80[EUR][1000 genomes]
rs4691171	0.92[ASN][1000 genomes]
rs4691172	0.89[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4691173	1.00[ASN][1000 genomes]
rs4691176	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4691177	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs56785718	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58004273	0.97[ASN][1000 genomes]
rs58875777	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62353271	0.81[EUR][1000 genomes]
rs6834975	0.89[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6835694	0.92[ASN][1000 genomes]
rs6846518	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72993957	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7656235	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7686032	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9968334	0.89[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs9993501	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022210	chr4:165792630-166251612	Genic enhancers Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv537337	chr4:165792630-166251612	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1021905	chr4:165852926-166212878	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv533191	chr4:165879671-166171638	Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv881168	chr4:165975122-166196438	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166110800-166114800	Enhancers	Liver	Liver
2	chr4:166111400-166114400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr4:166111600-166113200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:166112400-166114000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr4:166112400-166114000	Enhancers	Fetal Heart	heart
6	chr4:166112600-166113400	Enhancers	Primary T cells from cord blood	blood
7	chr4:166112600-166114800	Weak transcription	Fetal Brain Female	brain
8	chr4:166112800-166113200	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr4:166112800-166119000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr4:166112800-166120800	Weak transcription	HSMMtube	muscle

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