Variant report

Variant	rs4691176
Chromosome Location	chr4:166121538-166121539
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:166116530..166118783-chr4:166119750..166122677,2	K562	blood:
2	chr4:166119524..166122454-chr4:166247484..166249328,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000052802	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10018252	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10032366	0.81[ASN][1000 genomes]
rs11724462	0.81[ASN][1000 genomes]
rs11724504	0.97[ASN][1000 genomes]
rs11735290	0.81[ASN][1000 genomes]
rs11735317	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12332076	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17172935	0.85[AFR][1000 genomes]
rs17585306	0.81[ASN][1000 genomes]
rs17585333	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28635044	0.81[ASN][1000 genomes]
rs28875870	0.82[AMR][1000 genomes]
rs4234892	0.82[AMR][1000 genomes]
rs4588419	0.82[AMR][1000 genomes]
rs4605609	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4690807	0.82[AMR][1000 genomes]
rs4690808	0.82[AMR][1000 genomes]
rs4691173	0.81[ASN][1000 genomes]
rs4691177	1.00[ASN][1000 genomes]
rs6846518	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72993956	0.87[AFR][1000 genomes]
rs72993957	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7686032	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9993501	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022210	chr4:165792630-166251612	Genic enhancers Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv537337	chr4:165792630-166251612	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1021905	chr4:165852926-166212878	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv533191	chr4:165879671-166171638	Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv881168	chr4:165975122-166196438	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166115400-166127400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr4:166119200-166121600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:166119800-166127400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr4:166120600-166125200	Weak transcription	NHDF-Ad	bronchial
5	chr4:166120800-166125200	Weak transcription	NH-A	brain
6	chr4:166121000-166127800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr4:166121200-166125200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr4:166121400-166121600	Enhancers	Pancreas	Pancrea
9	chr4:166121400-166122600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr4:166121400-166124600	Weak transcription	NHEK	skin
11	chr4:166121400-166124800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr4:166121400-166124800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr4:166121400-166124800	Weak transcription	HMEC	breast
14	chr4:166121400-166125000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr4:166121400-166125400	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links