Variant report

Variant	rs6846518
Chromosome Location	chr4:166109696-166109697
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10018252	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10023382	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs10032366	1.00[ASN][1000 genomes]
rs11724462	1.00[ASN][1000 genomes]
rs11724504	0.83[ASN][1000 genomes]
rs11735290	1.00[ASN][1000 genomes]
rs11735317	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11939254	0.83[ASN][1000 genomes]
rs12332076	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17585306	1.00[ASN][1000 genomes]
rs17585333	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28495910	0.92[ASN][1000 genomes]
rs28635044	1.00[ASN][1000 genomes]
rs4605609	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4691171	0.92[ASN][1000 genomes]
rs4691172	0.92[ASN][1000 genomes]
rs4691173	1.00[ASN][1000 genomes]
rs4691176	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4691177	0.81[ASN][1000 genomes]
rs56785718	0.81[AMR][1000 genomes]
rs58004273	0.97[ASN][1000 genomes]
rs58875777	0.88[AMR][1000 genomes]
rs6834975	0.92[ASN][1000 genomes]
rs6835694	0.92[ASN][1000 genomes]
rs72993957	0.81[ASN][1000 genomes]
rs7656235	0.81[AMR][1000 genomes]
rs7686032	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9968334	0.92[ASN][1000 genomes]
rs9993501	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022210	chr4:165792630-166251612	Genic enhancers Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv537337	chr4:165792630-166251612	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1021905	chr4:165852926-166212878	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv533191	chr4:165879671-166171638	Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv881168	chr4:165975122-166196438	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:166109200-166110400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:166109400-166110800	Weak transcription	Liver	Liver

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