Variant report

Variant	rs4611790
Chromosome Location	chr3:111887317-111887318
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1627007	1.00[YRI][hapmap]
rs340162	1.00[YRI][hapmap]
rs4334617	1.00[AFR][1000 genomes]
rs4383485	1.00[YRI][hapmap]
rs4524248	1.00[AFR][1000 genomes]
rs4682084	1.00[AFR][1000 genomes]
rs4682363	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs6796382	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7374744	1.00[YRI][hapmap]
rs7642708	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7653647	1.00[YRI][hapmap]
rs774777	1.00[YRI][hapmap]
rs9755969	1.00[YRI][hapmap]
rs9846417	1.00[AFR][1000 genomes]
rs9851465	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010219	chr3:111856709-111923647	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	esv3323712	chr3:111861311-111890479	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111876400-111891400	Weak transcription	Right Ventricle	heart
2	chr3:111885400-111887400	Weak transcription	Esophagus	oesophagus
3	chr3:111885400-111894000	Weak transcription	Gastric	stomach
4	chr3:111885400-111897200	Weak transcription	Pancreas	Pancrea
5	chr3:111885400-111904200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:111885400-111904600	Weak transcription	Left Ventricle	heart
7	chr3:111886600-111887800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:111886800-111887600	Enhancers	Primary B cells from cord blood	blood
9	chr3:111887200-111887600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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