Variant report

Variant	rs6796382
Chromosome Location	chr3:111875922-111875923
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1627007	1.00[YRI][hapmap]
rs340162	1.00[YRI][hapmap]
rs4334617	1.00[AFR][1000 genomes]
rs4383485	1.00[YRI][hapmap]
rs4524248	1.00[AFR][1000 genomes]
rs4611790	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs4682084	1.00[AFR][1000 genomes]
rs4682363	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7374744	1.00[YRI][hapmap]
rs7642708	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7653647	1.00[YRI][hapmap]
rs774777	1.00[YRI][hapmap]
rs9755969	1.00[YRI][hapmap]
rs9846417	1.00[AFR][1000 genomes]
rs9851465	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010219	chr3:111856709-111923647	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	esv3323712	chr3:111861311-111890479	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111869000-111878400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:111869400-111884400	Weak transcription	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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