Variant report

Variant	rs7374744
Chromosome Location	chr3:111963143-111963144
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1627007	1.00[YRI][hapmap]
rs340162	1.00[YRI][hapmap]
rs4383485	1.00[YRI][hapmap]
rs4419354	1.00[AFR][1000 genomes]
rs4450780	1.00[AFR][1000 genomes]
rs4611790	1.00[YRI][hapmap]
rs4682098	1.00[AFR][1000 genomes]
rs4682363	1.00[YRI][hapmap]
rs6796382	1.00[YRI][hapmap]
rs7615921	1.00[AFR][1000 genomes]
rs7642708	1.00[YRI][hapmap]
rs7653647	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9755969	1.00[YRI][hapmap]
rs9849955	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10307	chr3:111903974-112087686	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591292	chr3:111914624-111993915	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv877340	chr3:111936961-112013546	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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