Variant report

Variant	rs4615398
Chromosome Location	chr6:101539082-101539083
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs12208565	1.00[ASN][1000 genomes]
rs1222375	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17061230	1.00[ASN][1000 genomes]
rs2254178	1.00[ASN][1000 genomes]
rs2399557	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2749130	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2756040	1.00[ASN][1000 genomes]
rs2764271	1.00[ASN][1000 genomes]
rs4240592	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4429955	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4455678	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4839795	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs570556	1.00[ASN][1000 genomes]
rs592463	1.00[ASN][1000 genomes]
rs600653	1.00[ASN][1000 genomes]
rs606032	1.00[ASN][1000 genomes]
rs609522	1.00[ASN][1000 genomes]
rs612117	1.00[ASN][1000 genomes]
rs614097	1.00[ASN][1000 genomes]
rs617365	0.85[CEU][hapmap];1.00[ASN][1000 genomes]
rs625745	0.85[CEU][hapmap];1.00[ASN][1000 genomes]
rs626262	1.00[ASN][1000 genomes]
rs626411	1.00[ASN][1000 genomes]
rs635258	1.00[ASN][1000 genomes]
rs640315	1.00[ASN][1000 genomes]
rs643101	1.00[ASN][1000 genomes]
rs658318	1.00[ASN][1000 genomes]
rs668932	1.00[ASN][1000 genomes]
rs673138	1.00[ASN][1000 genomes]
rs674589	1.00[ASN][1000 genomes]
rs697438	1.00[ASN][1000 genomes]
rs705612	1.00[ASN][1000 genomes]
rs705618	1.00[ASN][1000 genomes]
rs72944877	1.00[ASN][1000 genomes]
rs72946427	1.00[ASN][1000 genomes]
rs7740295	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7755696	1.00[ASN][1000 genomes]
rs817226	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs817227	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs817228	0.88[EUR][1000 genomes]
rs817234	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs846790	1.00[ASN][1000 genomes]
rs9377258	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9390724	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9498487	1.00[ASN][1000 genomes]
rs9498519	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1019213	chr6:101225650-101623140	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv538391	chr6:101225650-101623140	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4615398	ASCC3	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101534800-101540200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:101539000-101539400	Enhancers	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links