Variant report

Variant	rs462441
Chromosome Location	chr6:101104919-101104920
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:101103606..101105187-chr6:101110691..101113240,2	K562	blood:
2	chr6:100933157..100934125-chr6:101104912..101105845,2	MCF-7	breast:
3	chr6:100554526..100556212-chr6:101104828..101106229,8	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17672990	1.00[ASN][1000 genomes]
rs239228	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35437548	0.85[AFR][1000 genomes]
rs466745	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949535	chr6:100740293-101469052	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1028016	chr6:101001055-101158822	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv886445	chr6:101004751-101240763	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv886448	chr6:101018032-101123503	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv886449	chr6:101018032-101147095	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv886450	chr6:101018032-101168137	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv886451	chr6:101018032-101172328	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv886452	chr6:101018032-101192051	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv886453	chr6:101018032-101203051	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv463988	chr6:101036713-101158950	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv604266	chr6:101036713-101158950	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv886454	chr6:101049108-101123503	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv886455	chr6:101049108-101203051	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv886456	chr6:101049108-101277926	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv463990	chr6:101058886-101123503	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv604269	chr6:101058886-101123503	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	nsv604270	chr6:101058886-101196080	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv604271	chr6:101072307-101158950	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
19	nsv463991	chr6:101072307-101196080	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
20	nsv604272	chr6:101072307-101196080	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
21	nsv463992	chr6:101072307-101197953	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
22	nsv604273	chr6:101072307-101197953	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
23	nsv604274	chr6:101078718-101196080	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
24	nsv1027288	chr6:101091434-101121237	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
25	nsv1032826	chr6:101091434-101147095	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
26	nsv1028583	chr6:101091434-101152631	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
27	nsv1015465	chr6:101091434-101157493	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
28	nsv1031817	chr6:101091995-101157493	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101032600-101110400	Weak transcription	Colon Smooth Muscle	Colon
2	chr6:101037400-101110600	Weak transcription	K562	blood
3	chr6:101037800-101107200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:101068400-101106200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr6:101071600-101127800	Weak transcription	Hela-S3	cervix
6	chr6:101076400-101107200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr6:101076400-101110400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:101081200-101106000	Weak transcription	Fetal Brain Male	brain
9	chr6:101081600-101110800	Weak transcription	HSMMtube	muscle
10	chr6:101085800-101111000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:101086000-101105800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:101086800-101111000	Weak transcription	NHLF	lung
13	chr6:101087200-101110800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:101091800-101105200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr6:101092800-101110200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr6:101093000-101107400	Weak transcription	Fetal Kidney	kidney
17	chr6:101093000-101110800	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr6:101093000-101111600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr6:101093000-101112400	Weak transcription	Fetal Intestine Large	intestine
20	chr6:101093000-101145800	Weak transcription	Fetal Thymus	thymus
21	chr6:101094600-101108400	Weak transcription	GM12878-XiMat	blood
22	chr6:101094800-101105600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr6:101096800-101109200	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr6:101099400-101116600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr6:101100200-101118000	Weak transcription	Primary hematopoietic stem cells	blood
26	chr6:101100400-101106000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr6:101100400-101108400	Weak transcription	HMEC	breast
28	chr6:101100400-101109200	Weak transcription	NHDF-Ad	bronchial
29	chr6:101100400-101111000	Weak transcription	HUVEC	blood vessel
30	chr6:101100400-101111200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr6:101100400-101131400	Weak transcription	Liver	Liver
32	chr6:101100600-101111200	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr6:101100600-101149800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr6:101100800-101106400	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr6:101100800-101106600	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr6:101100800-101109600	Weak transcription	Primary T cells from cord blood	blood
37	chr6:101100800-101110200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr6:101100800-101110600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr6:101100800-101110600	Weak transcription	Fetal Muscle Trunk	muscle
40	chr6:101100800-101110800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr6:101100800-101110800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr6:101100800-101110800	Weak transcription	NHEK	skin
43	chr6:101100800-101111000	Weak transcription	Osteobl	bone
44	chr6:101100800-101117800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr6:101100800-101118000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr6:101100800-101122400	Weak transcription	Duodenum Mucosa	Duodenum
47	chr6:101100800-101124400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr6:101100800-101126600	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr6:101100800-101129200	Weak transcription	Primary monocytes fromperipheralblood	blood
50	chr6:101100800-101147600	Weak transcription	Primary B cells from peripheral blood	blood

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