Variant report

Variant	rs4627260
Chromosome Location	chr14:80943048-80943049
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1013010	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11159463	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2044774	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2122430	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2197984	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2197985	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2371291	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2371294	0.82[EUR][1000 genomes]
rs2371295	0.82[EUR][1000 genomes]
rs2888003	0.81[AMR][1000 genomes]
rs4899770	0.85[EUR][1000 genomes]
rs4899771	0.85[EUR][1000 genomes]
rs4899773	0.85[EUR][1000 genomes]
rs4903916	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4903917	0.81[EUR][1000 genomes]
rs7141716	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7143767	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7144280	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8020519	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80939200-80980800	Weak transcription	Primary T cells from cord blood	blood
2	chr14:80940400-80949200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr14:80941000-80944800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr14:80941000-80944800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr14:80941000-80945000	Enhancers	NHDF-Ad	bronchial
6	chr14:80941200-80944000	Enhancers	Osteobl	bone
7	chr14:80941200-80945400	Enhancers	NHLF	lung
8	chr14:80941600-80948800	Weak transcription	Psoas Muscle	Psoas
9	chr14:80941600-80989200	Weak transcription	Left Ventricle	heart
10	chr14:80941800-80956800	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr14:80942000-80943200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr14:80942200-80943400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr14:80942400-80943400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr14:80942600-80943400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr14:80942600-80943800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr14:80942600-80944600	Enhancers	HSMM	muscle
17	chr14:80943000-80944000	Weak transcription	Skeletal Muscle Female	skeletal muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links