Variant report

Variant	rs4903916
Chromosome Location	chr14:80940153-80940154
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1013010	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10130859	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10146495	0.88[ASN][1000 genomes]
rs11159463	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12147045	0.93[ASN][1000 genomes]
rs12587812	0.88[ASN][1000 genomes]
rs12894863	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1868631	0.87[ASN][1000 genomes]
rs1868632	0.81[EUR][1000 genomes]
rs2044774	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2122430	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2122433	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2167149	0.88[ASN][1000 genomes]
rs2197984	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2197985	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2197987	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2371291	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2371292	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2371293	0.87[ASN][1000 genomes]
rs2371294	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2371295	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2371297	0.88[ASN][1000 genomes]
rs2371298	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2371299	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2371300	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2371353	0.88[ASN][1000 genomes]
rs2888003	0.88[ASN][1000 genomes]
rs4627260	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4899770	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4899771	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4899772	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4899773	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4903917	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4903919	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4903920	0.88[ASN][1000 genomes]
rs4903921	0.88[ASN][1000 genomes]
rs4903922	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4903923	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4903924	0.87[ASN][1000 genomes]
rs6574584	0.88[ASN][1000 genomes]
rs7141716	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7143767	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7144280	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7144755	0.87[ASN][1000 genomes]
rs7156719	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7158378	0.87[ASN][1000 genomes]
rs7159700	0.88[ASN][1000 genomes]
rs7160179	0.88[ASN][1000 genomes]
rs8003205	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8016077	0.87[ASN][1000 genomes]
rs8020519	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs935730	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80923400-80941200	Weak transcription	HSMM	muscle
2	chr14:80925200-80941400	Weak transcription	Psoas Muscle	Psoas
3	chr14:80936200-80941800	Strong transcription	Skeletal Muscle Male	skeletal muscle
4	chr14:80937000-80943000	Strong transcription	Skeletal Muscle Female	skeletal muscle
5	chr14:80938400-80940400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr14:80938800-80941200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr14:80939000-80941400	ZNF genes & repeats	Dnd41	blood
8	chr14:80939200-80980800	Weak transcription	Primary T cells from cord blood	blood
9	chr14:80939400-80940400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
10	chr14:80939600-80940200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links