Variant report

Variant	rs7160179
Chromosome Location	chr14:80984413-80984414
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1013010	0.95[ASN][1000 genomes]
rs10130859	1.00[ASN][1000 genomes]
rs10146495	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12147045	0.95[ASN][1000 genomes]
rs12587812	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12893026	0.85[ASN][1000 genomes]
rs12894863	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1868631	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1868632	1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs2044774	1.00[ASN][1000 genomes]
rs2122430	0.90[ASN][1000 genomes]
rs2122433	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2167149	1.00[CHB][hapmap];0.91[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2197984	0.90[ASN][1000 genomes]
rs2197985	0.90[ASN][1000 genomes]
rs2197987	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2371291	0.95[ASN][1000 genomes]
rs2371292	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2371293	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2371294	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2371295	0.98[ASN][1000 genomes]
rs2371297	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2371298	1.00[ASN][1000 genomes]
rs2371299	0.81[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2371300	1.00[ASN][1000 genomes]
rs2371353	0.81[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2888003	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4899770	0.98[ASN][1000 genomes]
rs4899771	0.98[ASN][1000 genomes]
rs4899772	0.98[ASN][1000 genomes]
rs4899773	0.81[CEU][hapmap];0.90[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4903916	0.88[ASN][1000 genomes]
rs4903917	0.90[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4903919	1.00[ASN][1000 genomes]
rs4903920	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4903921	1.00[CEU][hapmap];0.90[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4903922	0.81[CEU][hapmap];1.00[ASN][1000 genomes]
rs4903923	1.00[ASN][1000 genomes]
rs4903924	0.81[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6574584	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7141716	0.88[ASN][1000 genomes]
rs7143767	0.97[ASN][1000 genomes]
rs7144280	0.97[ASN][1000 genomes]
rs7144755	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7156719	0.80[CEU][hapmap];0.90[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7158378	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7159700	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8003205	0.81[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8016077	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8020519	0.95[ASN][1000 genomes]
rs935730	0.81[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80941600-80989200	Weak transcription	Left Ventricle	heart
2	chr14:80951800-81003000	Weak transcription	Psoas Muscle	Psoas
3	chr14:80962200-80997800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr14:80968400-80990400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:80971800-80994400	Weak transcription	Primary B cells from cord blood	blood
6	chr14:80978600-81006600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr14:80979400-80986200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr14:80979400-80986200	Strong transcription	Dnd41	blood
9	chr14:80979600-80991600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr14:80979600-80993200	Weak transcription	Fetal Muscle Leg	muscle
11	chr14:80979800-80990200	Weak transcription	Brain Germinal Matrix	brain
12	chr14:80980400-80988600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr14:80980400-80993600	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr14:80980600-80985800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr14:80980600-81001600	Weak transcription	Fetal Lung	lung
16	chr14:80980800-80988600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr14:80981200-80993000	Weak transcription	Ovary	ovary
18	chr14:80981600-80990400	Weak transcription	Gastric	stomach
19	chr14:80981600-80996000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr14:80981800-80993400	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr14:80982000-80984800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr14:80982200-80984600	Weak transcription	Spleen	Spleen
23	chr14:80982200-80987800	Weak transcription	Fetal Thymus	thymus
24	chr14:80982200-80989200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr14:80982200-80989400	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr14:80982200-80989600	Weak transcription	A549	lung
27	chr14:80982200-80996600	Weak transcription	Primary T cells from cord blood	blood
28	chr14:80982400-80984600	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr14:80982400-80989000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr14:80982400-80990800	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr14:80982800-81002800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr14:80983000-80988200	Weak transcription	Aorta	Aorta
33	chr14:80983000-80994200	Weak transcription	Adipose Nuclei	Adipose
34	chr14:80983000-81001600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr14:80983200-80989200	Weak transcription	HSMM	muscle
36	chr14:80983200-80994000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr14:80983200-80994200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr14:80984000-80984600	ZNF genes & repeats	Pancreas	Pancrea
39	chr14:80984200-80988000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr14:80984400-81000600	Weak transcription	Thymus	Thymus

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