Variant report

Variant	rs4903923
Chromosome Location	chr14:80975110-80975111
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1013010	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10130859	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10146495	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11159463	0.83[EUR][1000 genomes]
rs12147045	0.95[ASN][1000 genomes]
rs12587812	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12893026	0.85[ASN][1000 genomes]
rs12894863	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1868631	0.98[ASN][1000 genomes]
rs1868632	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2044774	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2122430	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2122433	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2167149	1.00[ASN][1000 genomes]
rs2197984	0.90[ASN][1000 genomes]
rs2197985	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2197987	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2371291	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2371292	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2371293	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2371294	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2371295	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2371297	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2371298	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2371299	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2371300	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2371353	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2888003	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899770	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4899771	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4899772	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4899773	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4903916	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4903917	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4903919	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4903920	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4903921	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4903922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4903924	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6574584	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7141716	0.88[ASN][1000 genomes]
rs7143767	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7144280	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7144755	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7156719	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7158378	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7159700	1.00[ASN][1000 genomes]
rs7160179	1.00[ASN][1000 genomes]
rs8003205	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016077	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs8020519	0.95[ASN][1000 genomes]
rs935730	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80939200-80980800	Weak transcription	Primary T cells from cord blood	blood
2	chr14:80941600-80989200	Weak transcription	Left Ventricle	heart
3	chr14:80951800-81003000	Weak transcription	Psoas Muscle	Psoas
4	chr14:80958200-80981200	Weak transcription	Fetal Thymus	thymus
5	chr14:80958200-80981200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr14:80958800-80981400	Weak transcription	HSMM	muscle
7	chr14:80960200-80981000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr14:80960600-80979200	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr14:80962200-80997800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr14:80964600-80981600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr14:80966600-80981400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr14:80966800-80981400	Weak transcription	A549	lung
13	chr14:80967400-80981600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr14:80967800-80981800	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr14:80968200-80981000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr14:80968400-80990400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr14:80968800-80981200	Weak transcription	Thymus	Thymus
18	chr14:80971800-80994400	Weak transcription	Primary B cells from cord blood	blood
19	chr14:80973600-80979400	Weak transcription	Dnd41	blood

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