Variant report

Variant	rs11159463
Chromosome Location	chr14:80934122-80934123
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1013010	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10130859	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10146495	0.93[CEU][hapmap]
rs12894863	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs1868632	0.87[CEU][hapmap];0.82[EUR][1000 genomes]
rs2044774	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2122430	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2122433	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs2197984	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2197985	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2197987	0.93[CEU][hapmap];0.82[EUR][1000 genomes]
rs2371291	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2371292	0.84[EUR][1000 genomes]
rs2371294	0.93[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2371295	0.89[EUR][1000 genomes]
rs2371298	0.84[EUR][1000 genomes]
rs2371299	0.93[CEU][hapmap];0.84[EUR][1000 genomes]
rs2371300	0.84[EUR][1000 genomes]
rs2371353	0.93[CEU][hapmap]
rs4627260	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4899770	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4899771	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4899772	0.86[EUR][1000 genomes]
rs4899773	0.93[CEU][hapmap];0.92[EUR][1000 genomes]
rs4903916	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4903917	0.87[EUR][1000 genomes]
rs4903919	0.83[EUR][1000 genomes]
rs4903922	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs4903923	0.83[EUR][1000 genomes]
rs4903924	0.93[CEU][hapmap]
rs7141716	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7143767	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7144280	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7156719	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs72689020	1.00[ASN][1000 genomes]
rs8003205	0.93[CEU][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8020519	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs935730	0.93[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv15289	chr14:80900600-80939903	Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv3343342	chr14:80930938-80938992	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80923400-80941200	Weak transcription	HSMM	muscle
2	chr14:80925200-80941400	Weak transcription	Psoas Muscle	Psoas
3	chr14:80926000-80937000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr14:80926200-80936200	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr14:80929600-80939200	Weak transcription	Thymus	Thymus
6	chr14:80931400-80935000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr14:80932000-80934400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr14:80932000-80934800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr14:80932600-80936400	Weak transcription	Fetal Muscle Leg	muscle

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