Variant report

Variant	rs1868631
Chromosome Location	chr14:80997532-80997533
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1013010	0.93[ASN][1000 genomes]
rs10130859	0.98[ASN][1000 genomes]
rs10146495	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12147045	0.93[ASN][1000 genomes]
rs12587812	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12893026	0.83[ASN][1000 genomes]
rs12894863	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1868632	1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2044774	0.98[ASN][1000 genomes]
rs2122430	0.88[ASN][1000 genomes]
rs2122433	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2167149	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2197984	0.88[ASN][1000 genomes]
rs2197985	0.88[ASN][1000 genomes]
rs2197987	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2371291	0.93[ASN][1000 genomes]
rs2371292	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2371293	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2371294	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2371295	0.97[ASN][1000 genomes]
rs2371297	0.98[ASN][1000 genomes]
rs2371298	0.98[ASN][1000 genomes]
rs2371299	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.98[ASN][1000 genomes]
rs2371300	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2371353	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2888003	0.98[ASN][1000 genomes]
rs4899770	0.97[ASN][1000 genomes]
rs4899771	0.97[ASN][1000 genomes]
rs4899772	0.97[ASN][1000 genomes]
rs4899773	0.81[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.97[ASN][1000 genomes]
rs4903916	0.87[ASN][1000 genomes]
rs4903917	0.90[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs4903919	0.98[ASN][1000 genomes]
rs4903920	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4903921	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.95[MKK][hapmap];0.86[TSI][hapmap];0.86[YRI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4903922	0.81[CEU][hapmap];0.98[ASN][1000 genomes]
rs4903923	0.98[ASN][1000 genomes]
rs4903924	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6574584	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7141716	0.87[ASN][1000 genomes]
rs7143767	0.95[ASN][1000 genomes]
rs7144280	0.95[ASN][1000 genomes]
rs7144755	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7156719	0.80[CEU][hapmap];0.90[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7158378	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7159700	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7160179	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8003205	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs8016077	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8020519	0.93[ASN][1000 genomes]
rs935730	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80951800-81003000	Weak transcription	Psoas Muscle	Psoas
2	chr14:80962200-80997800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr14:80978600-81006600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr14:80980600-81001600	Weak transcription	Fetal Lung	lung
5	chr14:80982800-81002800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr14:80983000-81001600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr14:80984400-81000600	Weak transcription	Thymus	Thymus
8	chr14:80989800-80998000	Weak transcription	HSMM	muscle
9	chr14:80990800-81001800	Weak transcription	A549	lung
10	chr14:80990800-81002800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr14:80992600-80998400	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr14:80993400-80998800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr14:80993600-80999200	Weak transcription	Fetal Thymus	thymus
14	chr14:80995000-80997800	Strong transcription	Dnd41	blood

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