Variant report

Variant	rs2371293
Chromosome Location	chr14:80967129-80967130
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs1013010	0.93[ASN][1000 genomes]
rs10130859	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10146495	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12147045	0.93[ASN][1000 genomes]
rs12587812	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12893026	0.83[ASN][1000 genomes]
rs12894863	0.98[ASN][1000 genomes]
rs1868631	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1868632	0.90[ASN][1000 genomes]
rs2044774	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2122430	0.88[ASN][1000 genomes]
rs2122433	0.98[ASN][1000 genomes]
rs2167149	0.98[ASN][1000 genomes]
rs2197984	0.88[ASN][1000 genomes]
rs2197985	0.88[ASN][1000 genomes]
rs2197987	0.98[ASN][1000 genomes]
rs2371291	0.93[ASN][1000 genomes]
rs2371292	1.00[ASN][1000 genomes]
rs2371294	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2371295	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2371297	0.87[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2371298	0.98[ASN][1000 genomes]
rs2371299	0.98[ASN][1000 genomes]
rs2371300	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2371353	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2888003	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4899770	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4899771	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4899772	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4899773	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4903916	0.87[ASN][1000 genomes]
rs4903917	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4903919	0.98[ASN][1000 genomes]
rs4903920	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4903921	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4903922	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4903923	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs4903924	1.00[ASN][1000 genomes]
rs6574584	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7141716	0.87[ASN][1000 genomes]
rs7143767	0.98[ASN][1000 genomes]
rs7144280	0.98[ASN][1000 genomes]
rs7144755	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7156719	0.98[ASN][1000 genomes]
rs7158378	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7159700	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7160179	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8003205	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs8016077	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8020519	0.93[ASN][1000 genomes]
rs935730	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869348	chr14:80921098-81535754	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80939200-80980800	Weak transcription	Primary T cells from cord blood	blood
2	chr14:80941600-80989200	Weak transcription	Left Ventricle	heart
3	chr14:80951800-81003000	Weak transcription	Psoas Muscle	Psoas
4	chr14:80958200-80968000	Weak transcription	Thymus	Thymus
5	chr14:80958200-80981200	Weak transcription	Fetal Thymus	thymus
6	chr14:80958200-80981200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr14:80958800-80981400	Weak transcription	HSMM	muscle
8	chr14:80960200-80968400	Weak transcription	Spleen	Spleen
9	chr14:80960200-80981000	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr14:80960400-80968000	Weak transcription	Dnd41	blood
11	chr14:80960600-80979200	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr14:80962200-80997800	Weak transcription	Primary hematopoietic stem cells	blood
13	chr14:80964600-80981600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr14:80966600-80981400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr14:80966800-80981400	Weak transcription	A549	lung

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