Variant report

Variant	rs4636058
Chromosome Location	chr6:118424094-118424095
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:118423532..118426658-chr6:118429132..118430973,3	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1113896	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13210032	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1334828	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1573713	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1573714	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1573715	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1894612	0.85[CEU][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs2356075	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2484150	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34008090	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4945612	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs743927	0.85[CEU][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs743928	0.85[CEU][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs763098	0.85[CEU][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs7772177	0.82[CEU][hapmap];0.94[JPT][hapmap];0.86[ASN][1000 genomes]
rs9320642	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9374717	0.86[JPT][hapmap]
rs9374719	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9385036	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9387553	0.91[JPT][hapmap];0.87[TSI][hapmap]
rs9398484	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9481767	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9489307	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9489310	0.83[CEU][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4636058	SLC35F1	cis	cerebellum	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118422000-118424800	Enhancers	Brain Anterior Caudate	brain
2	chr6:118422000-118425600	Enhancers	Fetal Brain Male	brain
3	chr6:118422000-118426000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr6:118422200-118424400	Enhancers	Fetal Brain Female	brain
5	chr6:118422600-118427800	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr6:118422800-118424200	Enhancers	Fetal Lung	lung
7	chr6:118422800-118424600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr6:118423200-118424800	Enhancers	Left Ventricle	heart
9	chr6:118423400-118424600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:118423400-118424800	Enhancers	Brain Cingulate Gyrus	brain
11	chr6:118423400-118425000	Enhancers	Brain Germinal Matrix	brain
12	chr6:118423400-118425400	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr6:118423400-118425400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:118423400-118428000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr6:118423800-118424800	Weak transcription	Brain Hippocampus Middle	brain
16	chr6:118423800-118424800	Enhancers	Spleen	Spleen
17	chr6:118424000-118424400	Weak transcription	Right Ventricle	heart
18	chr6:118424000-118430600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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