Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:118415452..118418143-chr6:118419953..118422521,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1113896	0.82[JPT][hapmap]
rs13210032	0.87[JPT][hapmap]
rs1334828	0.87[JPT][hapmap]
rs1573714	0.87[JPT][hapmap]
rs1573715	0.86[JPT][hapmap]
rs1894612	0.81[JPT][hapmap]
rs35458691	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4245499	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4270823	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4636058	0.86[JPT][hapmap]
rs6927289	0.85[CEU][hapmap]
rs743927	0.81[JPT][hapmap]
rs743928	0.81[JPT][hapmap]
rs763098	0.81[JPT][hapmap]
rs7741406	0.84[CEU][hapmap]
rs7757090	0.84[CEU][hapmap]
rs9320639	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9320642	0.86[JPT][hapmap]
rs9385031	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9385036	0.86[JPT][hapmap]
rs9387553	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9398484	0.91[JPT][hapmap]
rs9481761	0.84[CEU][hapmap]
rs9481762	0.84[CEU][hapmap]
rs9489303	0.88[CEU][hapmap]
rs9489310	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118421200-118422400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
2	chr6:118421400-118422200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:118421400-118422200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
4	chr6:118421400-118422800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:118421600-118423400	Enhancers	NH-A	brain
6	chr6:118421800-118424000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:118422000-118422600	Enhancers	Brain Germinal Matrix	brain
8	chr6:118422000-118422800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
9	chr6:118422000-118423400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:118422000-118424800	Enhancers	Brain Anterior Caudate	brain
11	chr6:118422000-118425600	Enhancers	Fetal Brain Male	brain
12	chr6:118422000-118426000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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