Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1113896	0.86[JPT][hapmap]
rs13210032	0.91[JPT][hapmap]
rs1334828	0.91[JPT][hapmap]
rs1573714	0.91[JPT][hapmap]
rs1573715	0.91[JPT][hapmap]
rs1894612	0.86[JPT][hapmap]
rs35458691	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4245499	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4270823	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4546521	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs4636058	0.91[JPT][hapmap];0.87[TSI][hapmap]
rs6927289	0.84[CEU][hapmap]
rs743927	0.86[JPT][hapmap]
rs743928	0.86[JPT][hapmap]
rs763098	0.86[JPT][hapmap]
rs7741406	0.84[CEU][hapmap]
rs7757090	0.84[CEU][hapmap]
rs7772177	0.83[JPT][hapmap]
rs9320639	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9320642	0.91[JPT][hapmap];0.87[TSI][hapmap]
rs9374717	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9385031	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9385036	0.84[CEU][hapmap];0.91[JPT][hapmap]
rs9398484	0.91[JPT][hapmap]
rs9481761	0.84[CEU][hapmap]
rs9481762	0.84[CEU][hapmap]
rs9489303	0.88[CEU][hapmap]
rs9489310	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9387553	SLC35F1	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118409600-118414600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain

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