Variant report

Variant	rs4637321
Chromosome Location	chr3:46506814-46506815
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12639258	1.00[ASN][1000 genomes]
rs13084167	0.94[EUR][1000 genomes]
rs13327723	1.00[ASN][1000 genomes]
rs59283024	1.00[ASN][1000 genomes]
rs61737000	1.00[ASN][1000 genomes]
rs6414427	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6414428	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6441998	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6441999	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7374925	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73831107	1.00[ASN][1000 genomes]
rs7641783	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7644995	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014624	chr3:46463424-46549188	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv1013306	chr3:46469014-46698538	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1009892	chr3:46496775-46546918	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv536553	chr3:46496775-46546918	Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46504800-46507000	Enhancers	Right Ventricle	heart
2	chr3:46504800-46509000	Enhancers	Spleen	Spleen
3	chr3:46505000-46507400	Weak transcription	Psoas Muscle	Psoas
4	chr3:46506200-46508600	Enhancers	Pancreas	Pancrea
5	chr3:46506400-46507000	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr3:46506600-46507000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:46506600-46507400	Enhancers	Gastric	stomach
8	chr3:46506800-46507000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
9	chr3:46506800-46507000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr3:46506800-46507800	Weak transcription	Left Ventricle	heart
11	chr3:46506800-46507800	Weak transcription	Lung	lung
12	chr3:46506800-46509600	Weak transcription	Right Atrium	heart
13	chr3:46506800-46510800	Enhancers	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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