Variant report

Variant	rs7374925
Chromosome Location	chr3:46522655-46522656
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11716682	1.00[CHB][hapmap]
rs11919651	1.00[CHB][hapmap]
rs12639258	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs13084167	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13327723	1.00[CHB][hapmap]
rs4637321	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6414427	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6414428	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6441998	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6441999	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7641783	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7644995	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014624	chr3:46463424-46549188	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv1013306	chr3:46469014-46698538	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1009892	chr3:46496775-46546918	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv536553	chr3:46496775-46546918	Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46511800-46530200	Weak transcription	Right Atrium	heart
2	chr3:46513400-46525800	Weak transcription	Left Ventricle	heart
3	chr3:46520400-46523600	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr3:46520800-46523000	Enhancers	Brain Hippocampus Middle	brain
5	chr3:46521400-46523000	Enhancers	Brain Cingulate Gyrus	brain
6	chr3:46521400-46523400	Enhancers	Brain Substantia Nigra	brain
7	chr3:46521600-46522800	Enhancers	Brain Anterior Caudate	brain
8	chr3:46521800-46522800	Enhancers	Brain Angular Gyrus	brain
9	chr3:46521800-46522800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr3:46521800-46522800	Enhancers	Spleen	Spleen
11	chr3:46521800-46523200	Enhancers	Fetal Intestine Large	intestine
12	chr3:46521800-46524400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr3:46522000-46523200	Enhancers	Fetal Intestine Small	intestine
14	chr3:46522400-46522800	Enhancers	Gastric	stomach
15	chr3:46522400-46522800	Enhancers	Pancreas	Pancrea
16	chr3:46522400-46522800	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr3:46522400-46527400	Enhancers	HSMM	muscle
18	chr3:46522600-46523000	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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