Variant report

Variant	rs4641051
Chromosome Location	chr8:67500231-67500232
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:67496067..67497890-chr8:67498573..67501512,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1909534	1.00[ASW][hapmap];0.83[MKK][hapmap];0.85[YRI][hapmap]
rs73259801	1.00[AMR][1000 genomes]
rs7818633	0.86[LWK][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7828663	1.00[AMR][1000 genomes]
rs7838950	0.96[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7839824	0.86[LWK][hapmap];0.82[MKK][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs7842774	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv831346	chr8:67486555-67675324	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67473400-67519600	Weak transcription	HMEC	breast
2	chr8:67474200-67521000	Weak transcription	NHEK	skin
3	chr8:67474200-67523000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr8:67474600-67511200	Weak transcription	A549	lung
5	chr8:67474600-67520000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:67474800-67523200	Weak transcription	NH-A	brain
7	chr8:67479000-67513600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr8:67481800-67523000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr8:67488400-67500400	Weak transcription	NHLF	lung
10	chr8:67488600-67505200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr8:67488600-67506000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr8:67488600-67508800	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr8:67488600-67523200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr8:67488800-67509000	Weak transcription	Dnd41	blood
15	chr8:67492600-67509200	Weak transcription	Osteobl	bone
16	chr8:67494000-67500400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr8:67494800-67503800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr8:67494800-67517800	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr8:67495000-67519600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr8:67496600-67517400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr8:67496800-67504600	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr8:67496800-67519600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr8:67498000-67506800	Weak transcription	Fetal Stomach	stomach
24	chr8:67498400-67502000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr8:67498600-67507800	Weak transcription	Left Ventricle	heart
26	chr8:67498800-67500800	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr8:67499200-67500400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr8:67499400-67500600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr8:67499400-67500600	Strong transcription	NHDF-Ad	bronchial
30	chr8:67499400-67503400	Weak transcription	Fetal Thymus	thymus
31	chr8:67499400-67518000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
32	chr8:67499400-67520800	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr8:67499800-67503400	Enhancers	Primary T cells fromperipheralblood	blood
34	chr8:67500000-67503200	Strong transcription	HSMM	muscle
35	chr8:67500200-67500800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr8:67500200-67502600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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