Variant report

Variant	rs7839824
Chromosome Location	chr8:67626143-67626144
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:28)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:28 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:67372183..67373683-chr8:67623863..67626623,2	MCF-7	breast:
2	chr8:67623840..67628206-chr8:67684536..67689963,10	MCF-7	breast:
3	chr8:67625790..67629580-chr8:67694202..67697997,3	MCF-7	breast:
4	chr8:67625031..67626692-chr8:67723535..67725541,2	MCF-7	breast:
5	chr8:67379259..67381817-chr8:67625879..67628203,2	MCF-7	breast:
6	chr8:67625194..67627994-chr8:67835989..67838898,3	MCF-7	breast:
7	chr8:67434410..67435385-chr8:67625937..67627020,20	MCF-7	breast:
8	chr8:67453447..67455816-chr8:67625265..67627410,2	MCF-7	breast:
9	chr8:67036079..67036843-chr8:67626027..67626876,2	MCF-7	breast:
10	chr8:67624933..67626840-chr8:70404538..70406307,2	MCF-7	breast:
11	chr8:67625999..67626904-chr8:67653778..67654607,4	MCF-7	breast:
12	chr8:67424639..67425515-chr8:67626021..67627124,4	MCF-7	breast:
13	chr17:57922217..57924237-chr8:67625046..67626754,2	MCF-7	breast:
14	chr8:67625428..67627452-chr8:67654330..67656798,2	MCF-7	breast:
15	chr8:67577155..67579623-chr8:67622850..67626306,3	K562	blood:
16	chr8:67617194..67618857-chr8:67625197..67627686,2	MCF-7	breast:
17	chr8:67424767..67425416-chr8:67625919..67627124,5	MCF-7	breast:
18	chr8:67574105..67581178-chr8:67622567..67628099,10	MCF-7	breast:
19	chr8:67374805..67375440-chr8:67626072..67626739,2	MCF-7	breast:
20	chr8:67434399..67435255-chr8:67625653..67626504,4	MCF-7	breast:
21	chr8:67588205..67591074-chr8:67623136..67626196,3	MCF-7	breast:
22	chr8:67424323..67425873-chr8:67625321..67626734,5	MCF-7	breast:
23	chr8:67626021..67626987-chr8:67653593..67654717,8	MCF-7	breast:
24	chr8:67625973..67626904-chr8:67653731..67654665,8	MCF-7	breast:
25	chr8:67434405..67435275-chr8:67626102..67627054,4	MCF-7	breast:
26	chr8:67521707..67525650-chr8:67623825..67627698,8	MCF-7	breast:
27	chr8:67624145..67628067-chr8:67684003..67690579,11	MCF-7	breast:
28	chr8:67036035..67036843-chr8:67626010..67626876,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000185697	Chromatin interaction
ENSG00000169085	Chromatin interaction
ENSG00000104205	Chromatin interaction
ENSG00000270024	Chromatin interaction
ENSG00000137573	Chromatin interaction
ENSG00000213865	Chromatin interaction
ENSG00000245910	Chromatin interaction
ENSG00000175073	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs4641051	0.86[LWK][hapmap];0.82[MKK][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs73259801	1.00[AMR][1000 genomes]
rs7818633	0.85[LWK][hapmap];0.87[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7828663	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7838950	0.89[LWK][hapmap];0.82[MKK][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes]
rs7842774	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv831346	chr8:67486555-67675324	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67623800-67626200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:67624000-67626400	Active TSS	Duodenum Smooth Muscle	Duodenum
3	chr8:67624000-67626400	Active TSS	Fetal Kidney	kidney
4	chr8:67624200-67626200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
5	chr8:67624200-67626200	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr8:67624200-67626200	Active TSS	HSMMtube	muscle
7	chr8:67624200-67626400	Flanking Active TSS	Primary B cells from cord blood	blood
8	chr8:67624200-67626400	Active TSS	Primary T cells from cord blood	blood
9	chr8:67624200-67626400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr8:67624200-67626400	Active TSS	Brain Germinal Matrix	brain
11	chr8:67624200-67626400	Active TSS	Right Atrium	heart
12	chr8:67624200-67626400	Active TSS	Stomach Smooth Muscle	stomach
13	chr8:67624400-67626200	Active TSS	Brain Anterior Caudate	brain
14	chr8:67624400-67626200	Active TSS	Brain Substantia Nigra	brain
15	chr8:67624400-67626200	Active TSS	Psoas Muscle	Psoas
16	chr8:67624400-67626200	Active TSS	Right Ventricle	heart
17	chr8:67624400-67626400	Active TSS	Brain Hippocampus Middle	brain
18	chr8:67624400-67626400	Active TSS	Brain Inferior Temporal Lobe	brain
19	chr8:67624400-67626400	Active TSS	Pancreas	Pancrea
20	chr8:67624400-67626400	Active TSS	Rectal Smooth Muscle	rectum
21	chr8:67624400-67626600	Active TSS	Brain Angular Gyrus	brain
22	chr8:67624400-67626600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
23	chr8:67624400-67626800	Active TSS	Brain Cingulate Gyrus	brain
24	chr8:67624600-67626200	Active TSS	Primary T helper naive cells from peripheral blood	blood
25	chr8:67624600-67626200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr8:67624600-67626200	Active TSS	Lung	lung
27	chr8:67624600-67626200	Active TSS	Skeletal Muscle Female	skeletal muscle
28	chr8:67624600-67626200	Active TSS	HepG2	liver
29	chr8:67624600-67626400	Active TSS	NHLF	lung
30	chr8:67624600-67626600	Active TSS	Fetal Intestine Large	intestine
31	chr8:67624600-67626600	Active TSS	Fetal Intestine Small	intestine
32	chr8:67624800-67626200	Active TSS	Primary monocytes fromperipheralblood	blood
33	chr8:67624800-67626400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
34	chr8:67624800-67626400	Active TSS	Colonic Mucosa	Colon
35	chr8:67624800-67626400	Active TSS	Monocytes-CD14+_RO01746	blood
36	chr8:67625200-67626200	Flanking Active TSS	Primary B cells from peripheral blood	blood
37	chr8:67625200-67626200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
38	chr8:67625200-67626200	Flanking Active TSS	Dnd41	blood
39	chr8:67625400-67626200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr8:67625400-67626400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
41	chr8:67625400-67626400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
42	chr8:67625400-67626400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr8:67625400-67626800	Flanking Active TSS	Liver	Liver
44	chr8:67625600-67626200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr8:67625600-67626200	Enhancers	K562	blood
46	chr8:67625600-67626400	Enhancers	Placenta Amnion	Placenta Amnion
47	chr8:67625600-67626400	Flanking Active TSS	HMEC	breast
48	chr8:67625600-67626400	Flanking Active TSS	HUVEC	blood vessel
49	chr8:67625600-67626600	Enhancers	Fetal Heart	heart
50	chr8:67625600-67626800	Enhancers	Small Intestine	intestine

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