Variant report

Variant	rs73259801
Chromosome Location	chr8:67471617-67471618
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:67470309..67472916-chr8:67473544..67477242,3	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs4641051	1.00[AMR][1000 genomes]
rs58336876	1.00[EUR][1000 genomes]
rs73248131	1.00[EUR][1000 genomes]
rs73250216	1.00[EUR][1000 genomes]
rs73250222	1.00[EUR][1000 genomes]
rs73250226	1.00[EUR][1000 genomes]
rs73255666	1.00[EUR][1000 genomes]
rs73259795	1.00[EUR][1000 genomes]
rs7818633	1.00[AMR][1000 genomes]
rs7828663	1.00[AMR][1000 genomes]
rs7838950	1.00[AMR][1000 genomes]
rs7839824	1.00[AMR][1000 genomes]
rs7842774	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446467	chr8:66749863-67667068	Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:67460600-67472000	Weak transcription	NHLF	lung
2	chr8:67461200-67472000	Weak transcription	A549	lung
3	chr8:67461400-67471800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr8:67463600-67488200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr8:67464000-67493600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr8:67464600-67488200	Weak transcription	Dnd41	blood
7	chr8:67465200-67478400	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr8:67466600-67484000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr8:67467800-67471800	Weak transcription	Fetal Heart	heart
10	chr8:67468200-67473400	Weak transcription	Left Ventricle	heart
11	chr8:67468400-67473000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr8:67468600-67471800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr8:67468600-67471800	Weak transcription	NH-A	brain
14	chr8:67468600-67472000	Weak transcription	Brain Substantia Nigra	brain
15	chr8:67468600-67472000	Weak transcription	HSMM	muscle
16	chr8:67468600-67472200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr8:67468600-67474000	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr8:67468600-67480400	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr8:67468600-67480800	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr8:67468600-67493400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr8:67468800-67471800	Weak transcription	HUVEC	blood vessel
22	chr8:67468800-67472000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr8:67468800-67472600	Weak transcription	HMEC	breast
24	chr8:67468800-67473000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr8:67468800-67477600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr8:67469600-67487400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr8:67470400-67473400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr8:67470600-67471800	Weak transcription	Osteobl	bone
29	chr8:67470800-67476200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr8:67470800-67481200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr8:67471400-67472000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr8:67471400-67472200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr8:67471400-67472800	Enhancers	Stomach Smooth Muscle	stomach
34	chr8:67471400-67473200	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr8:67471600-67472000	Enhancers	Psoas Muscle	Psoas
36	chr8:67471600-67472400	Enhancers	Aorta	Aorta
37	chr8:67471600-67472800	Enhancers	Duodenum Smooth Muscle	Duodenum
38	chr8:67471600-67473000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr8:67471600-67473000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr8:67471600-67473000	Enhancers	Colon Smooth Muscle	Colon
41	chr8:67471600-67473200	Enhancers	Fetal Lung	lung
42	chr8:67471600-67473600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr8:67471600-67473600	Enhancers	Muscle Satellite Cultured Cells	--
44	chr8:67471600-67473600	Enhancers	HSMMtube	muscle
45	chr8:67471600-67473800	Enhancers	Hela-S3	cervix
46	chr8:67471600-67474000	Enhancers	Skeletal Muscle Female	skeletal muscle
47	chr8:67471600-67474200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr8:67471600-67474400	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links