Variant report

Variant	rs4646421
Chromosome Location	chr15:75016192-75016193
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75014713..75016571-chr15:75018498..75020290,2	MCF-7	breast:
2	chr15:75010612..75014177-chr15:75014520..75017331,4	MCF-7	breast:
3	chr15:75010497..75012932-chr15:75014660..75017447,2	K562	blood:
4	chr15:74988339..74990569-chr15:75013985..75017605,3	MCF-7	breast:
5	chr15:75008663..75010376-chr15:75014450..75017669,3	K562	blood:

Variant related genes	Relation type
ENSG00000179151	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1030888	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs10459601	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.81[MEX][hapmap]
rs11072496	0.86[MEX][hapmap]
rs11072497	0.82[GIH][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap]
rs11072498	0.82[GIH][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap]
rs11072499	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap];0.84[ASN][1000 genomes]
rs1128628	0.90[CHB][hapmap];0.95[JPT][hapmap]
rs11629749	0.83[TSI][hapmap]
rs11629946	0.83[TSI][hapmap]
rs17861109	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4073149	1.00[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs4646903	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6495112	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.85[JPT][hapmap];0.81[MEX][hapmap]
rs6495119	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.95[JPT][hapmap];0.90[MEX][hapmap]
rs6495121	0.82[GIH][hapmap];0.86[MEX][hapmap];0.87[TSI][hapmap]
rs7161903	0.82[GIH][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap]
rs7170734	0.85[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7175512	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs7178568	0.83[TSI][hapmap]
rs7497036	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[JPT][hapmap];0.81[MEX][hapmap]
rs7497342	0.82[GIH][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap]
rs8023786	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs950323	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904379	chr15:74869438-75027880	Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv817698	chr15:74889163-75019449	Genic enhancers Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	esv2763106	chr15:75014464-75034186	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75012400-75017600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:75012800-75016200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:75012800-75016600	Weak transcription	Liver	Liver
4	chr15:75013000-75017200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr15:75013000-75018000	Weak transcription	Left Ventricle	heart
6	chr15:75014200-75018200	Active TSS	Skeletal Muscle Male	skeletal muscle
7	chr15:75015600-75016200	Weak transcription	Lung	lung
8	chr15:75016000-75016200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr15:75016000-75016200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
10	chr15:75016000-75016400	Enhancers	H1 Cell Line	embryonic stem cell
11	chr15:75016000-75016400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:75016000-75016400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr15:75016000-75016600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr15:75016000-75016800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr15:75016000-75016800	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr15:75016000-75016800	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr15:75016000-75016800	Bivalent Enhancer	NHDF-Ad	bronchial
18	chr15:75016000-75017400	Enhancers	Hela-S3	cervix
19	chr15:75016000-75018000	Flanking Active TSS	HepG2	liver

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